Job Description P03007 Confidence 99.19% Date Thu Jan 5 10:57:50 GMT 2012 Rank 28 Aligned Residues 178 % Identity 13% Template c2gv9B_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase Resolution 2.68 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																	.	.	.													.	.																																		.	.	.
Query SS confidence																	.	.	.													.	.																																		.	.	.
Query Sequence		M	S	T	A	I	T	R	Q	I	V	L	D	T	E	T	.	.	.	T	G	M	N	Q	I	G	A	H	Y	E	G	.	.	H	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	D	R	L	V	D	P	.	.	.	E	A	F	G	V	H	G	I	A	D	E	F
Query Conservation																	.	.	.													.	.																																		.	.	.
Alig confidence																	.	.	.													.	.																																		.	.	.
Template Conservation
Template Sequence		S	D	L	P	A	Y	K	L	M	C	F	D	I	E	C	K	A	G	G	E	D	E	L	A	F	P	V	A	G	H	P	E	D	L	V	I	Q	I	S	C	L	L	Y	D	L	S	T	T	A	L	E	H	V	L	L	F	S	L	G	S	C	D	L	P	E	S	H	L	N	E	L	A	A	R	G	L	P	T	P	V
Template Known Secondary structure			S																	S	S		T	T	S				T	T	S	T	T	S												T	T	T												S															T	T
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	D	K	P	T	F	A	E	V	A	D	E	F	M	D	Y	I	.	.	.	R	G	A	E	L	V	I	H	N	A	A	.	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	N	T	F	C	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	E	F	D	S	E	F	E	M	L	L	A	F	M	T	L	V	K	Q	Y	G	P	E	F	V	T	G	Y	N	I	I	N	F	D	W	P	F	L	L	A	K	L	T	D	I	Y	K	V	P	L	D	G	Y	G	R	M	N	G	R	G	V	F	R	V	W	D	I	G	Q	S	H	F	Q	K	R	S	K	I	K
Template Known Secondary structure						S	S																		S					S	S	T	T	T	T											T	T	T					T	T	S	S	S	B	S	S	S								S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
							127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.																			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	V	T	D	S	L	A	V	A	R	K	M	F	P	G	K	R	N	S	L	D	A	L	C	A	.	R	Y	E	I	D	N	S	K	R	T	L	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	D	A	Q	I	L	A	E	V	Y	L	A	M
Query Conservation		.	.	.	.	.																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	G	M	V	N	I	D	M	Y	G	I	I	T	D	K	I	K	L	S	S	Y	K	L	N	A	V	A	E	A	V	L	K	D	K	K	K	D	L	S	Y	R	D	I	P	A	Y	Y	A	T	G	P	A	Q	R	G	V	I	G	E	Y	C	I	Q	D	S	L	L	V	G	Q	L	F	F	K	F
Template Known Secondary structure		B	T	T	B											T	T				S			S																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions