Job Description P03007 Confidence 98.37% Date Thu Jan 5 10:57:50 GMT 2012 Rank 45 Aligned Residues 169 % Identity 18% Template c2dtuA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog Resolution 2.37 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																							.																																																				.	.	.	.	.	.	.
Query SS confidence																							.																																																				.	.	.	.	.	.	.
Query Sequence		T	R	Q	I	V	L	D	T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	.	G	H	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	D	R	L	V	D	P	E	A	F	G	V	H	G	I	A	D	E	F	L	L	D	K	P	.	.	.	.	.	.	.
Query Conservation																							.																																																				.	.	.	.	.	.	.
Alig confidence																							.																				.	.																															.	.	.	.	.	.	.
Template Conservation																																											.	.
Template Sequence		I	R	V	A	N	F	D	I	E	V	T	S	P	D	G	F	P	E	P	S	Q	A	K	H	P	I	D	A	I	T	H	Y	D	S	I	D	D	R	F	Y	V	.	.	F	D	L	L	N	S	P	Y	G	N	V	E	E	W	S	I	E	I	A	A	K	L	Q	E	Q	G	G	D	E	V	P	S	E	I	I	D	K
Template Known Secondary structure		S												S	S	S	S			T	T	T			S										T	T	T	T					.	.							T	T													S		G	G	G	T						T	T	T	G	G	G
Template Predicted Secondary structure																																											.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
									78	.	80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																		.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.														.	.	.												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.														.	.	.												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	T	F	A	E	V	A	D	E	F	M	D	Y	I	.	.	.	R	G	A	E	L	V	I	H	N	A	A	.	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	N	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	K	V	T	D
Query Conservation		.	.	.	.	.	.	.														.	.	.												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.														.	.	.												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	Y	M	P	F	D	N	E	K	E	L	L	M	E	Y	L	N	F	W	Q	Q	K	T	P	V	I	L	T	G	W	N	V	E	S	F	A	I	P	Y	V	Y	N	R	I	K	N	I	F	G	E	S	T	A	K	R	L	S	P	H	R	K	T	R	V	K	V	G	E	I	I	T	L	F	G	I	S	V	L	D
Template Known Secondary structure								S	S															T			S					S	S	T	T	T	T													S						G	G	G	S	T	T	S						S	S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.																	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.																.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	A	V	A	R	K	M	.	.	F	P	G	K	R	N	S	L	D	A	L	C	A	R	Y	.	E	I	D	N	S	K	R	T	L	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	D	A	Q	I	L	A	E	V	Y	L	A	M
Query Conservation										.	.																.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																.								.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.
Template Sequence		Y	I	D	L	Y	K	K	F	S	F	T	N	Q	P	S	Y	S	L	D	Y	I	S	E	F	E	L	N	V	G	K	L	K	Y	.	.	D	G	P	I	S	K	L	R	E	S	N	H	Q	R	Y	I	S	Y	N	I	I	A	V	Y	R	V	L	Q	I	D	A	K	R
Template Known Secondary structure										S					S													S			S				.	.	S	S		G	G	G
Template Predicted Secondary structure																																			.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions