Job Description P03007 Confidence 99.18% Date Thu Jan 5 10:57:50 GMT 2012 Rank 29 Aligned Residues 167 % Identity 25% Template c2a1sC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of native parn nuclease domain Resolution 2.60 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.											.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.														.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.														.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	V	L	D	T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	.	.	.	.	.	.	.	.	.	.	G	H	K	I	I	E	I	G	A	V	E	V	V	.	.	.	.	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.														.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.														.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	F	A	I	D	G	E	F	S	G	I	S	D	F	D	T	P	E	E	R	Y	Q	K	L	K	K	H	S	M	D	F	L	L	F	Q	F	G	L	C	T	F	K	Y	D	Y	T	D	S	K	Y	I	T	K	S	F	N	F	Y	V	F	P	K	P	F	N	R	S	S	P	D	V	K	F	V	C	Q	S	S	S	I
Template Known Secondary structure										S		S																	T	T	T	B														T	T	T	T											B						S	S	S	S						B
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
						55	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	D	R	L	V	D	P	E	A	F	G	V	H	G	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	L	A	S	Q	G	F	D	F	N	K	V	F	R	N	G	I	P	Y	L	N	Q	E	E	E	R	Q	L	R	E	Q	Y	D	P	V	T	I	P	E	D	Q	K	K	F	I	D	Q	V	V	E	K	I	E	D	L	L	Q	S	E	E	N	K	N	L	D	L	E	P	C	T	G	F	Q	R	K	L	I	Y	Q
Template Known Secondary structure						T	T	T								T	T		B		B											T									T	T	T																S		S	S											S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
																																															70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	F	L	L	D	K	P	T	F	A	E	V	A	D	E	F	M	D	Y	I	R	G	A	E	L	V	I	H	N	A	A	F	D	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																																																																		.	.
Template Sequence		T	L	S	W	K	Y	P	K	G	I	H	V	E	T	L	E	T	E	K	K	E	R	Y	I	V	I	S	K	V	D	E	E	E	R	K	R	R	E	Q	Q	K	H	A	K	E	Q	E	E	L	N	D	A	V	G	F	S	R	V	I	H	A	I	A	N	.	.	S	G	K	L	V	I	G	H	N	M	L	L	D	V
Template Known Secondary structure								S	S	S									T	T																																			B	T										.	.								S	S
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.													160
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.																.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	.	.	.	.	.	.	.	.	.	T	N	T	F	C	K	V	T	D	S	L	A	V	A	R	.	.	.	K	M	F	P	G	K	R	N	S	L	D	A	L	C	A	R	Y	E	I	D	N	S	K	R	.	.	.	.	.	.	.	.	.	.	.	.	T
Query Conservation																		.	.	.	.	.	.	.	.	.																.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.			.					.	.	.	.	.	.	.	.	.																.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.			.
Template Sequence		M	H	T	V	H	Q	F	.	.	Y	C	.	P	L	P	A	D	L	S	E	F	K	E	M	T	T	C	V	F	P	R	L	L	D	T	K	L	M	A	S	T	Q	P	F	K	D	I	I	N	N	T	S	L	A	E	L	E	K	R	L	K	E	T	P	F	N	P	P	K	V	E	S	A	E	G	F	P	S	Y	Q
Template Known Secondary structure									.	.	T		.				S	S									T	T	T		S	S										S	T	T	T	T	T	T					S								T	T	S	T	T										T	T	S
Template Predicted Secondary structure									.	.			.
Template SS confidence
		294	.	.	.	.	.	300			.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	G	A	L	L	D	A	Q	I	L	A	E	V	Y	L	A	M	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	E	A	G	Y	D	A	Y	I	T	G	L	C	F	I	S	M	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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