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Job DescriptionP03007
Confidence100.00%DateThu Jan 5 10:57:50 GMT 2012
Rank2Aligned Residues211
% Identity17%Templatec1zbhA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  STAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVV. NRRLTGNNFHVYLKPDR. . LVDPEAFGVHGIADEFLLDKPT
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Template Sequence  DSYYDYICIIDFEATCEEGNP. PEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADT
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   124.....130.........140.... .....150.........160.........170.........180.........190.........200..
 
   7980.........90..... ....100..... ....110.........120.........130........ .140........
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Query Sequence  FAEVADEFMDYIRGAEL. . . . . . . VIHNAAFDIG. FMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMF. . PGKRNSLDAL
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Template Sequence  FPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP. . PFAKKWINIRKSYGNFYKVPRSQTKLTIM
Template Known Secondary structure  TTBTTTB
SSSTTTB


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   203......210.........220.........230.........240.........250. ........260.........270.........280
 
   149150.........160.........170.........180.........190.........200.........210......
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Query Sequence  CARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVF
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Template Sequence  LEKLGMDYDGR. PNCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHF
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   281........290. ........300.........310.........320.........330.........340.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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