Job Description P03007 Confidence 98.50% Date Thu Jan 5 10:57:50 GMT 2012 Rank 43 Aligned Residues 128 % Identity 18% Template c1yt3A_ PDB info PDB header:hydrolase,translation Chain: A: PDB Molecule:ribonuclease d; PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing Resolution 1.60 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	I	V	L	D	T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	G	H	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	D	R	L	V	D	P	E	A	F	G	V	H	G	I	A	D	E	F	L	L	D	K	P	T	F	A	E	V	A	D	E	F
Query Conservation
Alig confidence																			.	.	.									.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.									.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	I	A	L	D	T	E	F	V	R	T	R	T	Y	Y	P	.	.	.	Q	L	G	L	I	Q	L	F	.	.	.	.	.	.	.	.	.	.	D	G	E	H	L	A	L	I	D	P	L	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	W	S	P	L
Template Known Secondary structure		S												S		S	S		.	.	.									.	.	.	.	.	.	.	.	.	.		S	S							G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																			.	.	.									.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.											.	.	50	.	.	.	.	.	.	.	.	.	60																								.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.
Predicted Secondary structure											.	.																																																										.						.	.	.	.	.	.
Query SS confidence											.	.																																																										.						.	.	.	.	.	.
Query Sequence		M	D	Y	I	R	G	A	E	L	.	.	V	I	H	N	A	A	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	N	T	F	C	K	V	T	D	S	L	A	V	A	R	K	M	F	P	G	K	R	N	S	L	D	A	L	C	A	R	Y	.	E	I	D	N	S	.	.	.	.	.	.
Query Conservation											.	.																																																										.						.	.	.	.	.	.
Alig confidence											.	.																							.	.	.	.	.	.	.	.	.																											.						.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		K	A	I	L	R	D	P	S	I	T	K	F	L	H	A	G	S	E	D	L	E	V	F	L	N	V	F	G	E	L	P	Q	P	.	.	.	.	.	.	.	.	.	L	I	D	T	Q	I	L	A	A	F	C	G	R	P	M	S	W	G	F	A	S	M	V	E	E	Y	S	G	V	T	L	D	K	S	E	S	R	T
Template Known Secondary structure								T	T	S					S	S													S	S			S	S	.	.	.	.	.	.	.	.	.											T	T			T	T																		T	T	T	T	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.										100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
										158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	K	R	T	L	H	G	A	L	L	D	A	Q	I	L	A	E	V	Y	L	A	M	T
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	W	L	A	R	P	L	T	E	R	Q	C	E	Y	A	A	A	D	V	W	Y	L	L	P	I	T	A	K	L	M
Template Known Secondary structure			T	T	S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions