Return to main results Retrieve Phyre Job Id

Job DescriptionP03007
Confidence98.13%DateThu Jan 5 10:57:50 GMT 2012
Rank49Aligned Residues142
% Identity17%Templatec1s5jA_
PDB info PDB header:transferaseChain: A: PDB Molecule:dna polymerase i; PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10..... ....20.........30.........40.........50.........60.........70......
Predicted Secondary structure 







....

























Query SS confidence 














. . . .




























































Query Sequence  MSTAITRQIVLDTET. . . . TGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDK
Query Conservation        
 



 

....



        
 






           
   
 
   
   
  




 
 
   
Alig confidence 














....






.










.



































.....
Template Conservation     
 
 
 
 


  
     

  .      

 

.                             
     
.....
Template Sequence  TEIPKIKRVAIDIEVYTPVKGRIPDS. QKAEFPIISIA. LAGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTE. . . . .
Template Known Secondary structure  S







SSSS



T.TT

S
.TTS

SS





TTSS.....
Template Predicted Secondary structure 















.




.


















.....
Template SS confidence 















































































   220.........230.........240..... ....250...... ...260.........270.........280.........290..
 
   77..80.........90.. .......100. ........110.........120...... ...130.....
Predicted Secondary structure 



.



.











...................
Query SS confidence 















.








.
























. . . . . . . . . . . . . . . . . . .








Query Sequence  PTFAEVADEFMDYIRG. AELVIHNAA. FDIGFMDYEFSLLKRDIPKTNTFCK. . . . . . . . . . . . . . . . . . . VTDSLAVAR
Query Conservation    
  
   
   
  .  





 .

  

     
             ................... 



 


Alig confidence  ...












.








.
























...................








Template Conservation  ...  

  
   
 




 


   


 

  
   


                       

      
      
Template Sequence  . . . YELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYA
Template Known Secondary structure  ...TT
SSSTTTTTTT

GGG
S

STT

TTSTST
Template Predicted Secondary structure  ...




























Template SS confidence 















































































   293......300.........310.........320.........330.........340.........350.........360.........
 
   136...140.........150..
Predicted Secondary structure 






Query SS confidence 
















Query Sequence  KMFPGKRNSLDALCARY
Query Conservation     
    

  
    
Alig confidence 
















Template Conservation     

 

 
  

   
Template Sequence  FEGKYNEYNLDAVAKAL
Template Known Secondary structure  STT

SS
S
Template Predicted Secondary structure 







Template SS confidence 
















   370.........380......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions