Job Description P03007 Confidence 98.72% Date Thu Jan 5 10:57:50 GMT 2012 Rank 37 Aligned Residues 155 % Identity 17% Template c1d5aA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase); PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	T	R	Q	I	V	L	D	T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	G	H	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	D	R	L	V	D	P	E	A	F	G	V	H	G	I	A	D	E	F	L	L	D	K	P	T	F	A	E	V	A
Query Conservation
Alig confidence																		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	L	R	M	L	A	F	D	I	E	T	L	A	H	A	.	.	G	A	A	A	G	A	G	P	I	L	M	I	S	Y	A	D	E	E	G	A	R	V	I	T	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	I	D	L	P	Y	V	E	S	V	S	T	E	K	E	M	I
Template Known Secondary structure															S			.	.	S	S		S	S		S										T	T							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S					T	T					S	S
Template Predicted Secondary structure																		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		84	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure									.	.	.												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	F	M	D	Y	I	.	.	.	R	G	A	E	L	V	I	H	N	A	A	.	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	F	C	K	V	T	D	S	L	A	V	A	R	K	M	F	P	G	K
Query Conservation									.	.	.												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	F	L	K	V	I	Q	E	K	D	P	D	V	L	I	T	Y	N	G	D	N	F	D	F	A	Y	L	K	K	R	S	E	M	L	G	V	K	F	I	L	G	R	D	G	S	E	P	K	I	Q	R	M	G	D	R	F	A	V	E	V	K	G	R	I	H	F	D	L	Y	P	V	I	R	R	T	I	N	L	P
Template Known Secondary structure														S					S	S	T	T	T	T											T	T	T						S	T	T	S								S	S	S	S						T	T	S																S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																			.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	S	L	D	A	L	C	A	R	Y	E	I	D	N	S	K	R	T	L	H	G	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	Q	I	L	A	E	V	Y	L	A	M	T
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Y	T	L	E	T	V	Y	E	P	V	F	G	Q	P	A	E	K	V	Y	A	E	E	I	A	E	A	W	A	S	G	E	G	L	E	R	V	A	R	Y	S	M	E	D	A	K	A	T	Y	E	L	G	K	E	F	F
Template Known Secondary structure		S											S	S								S	S								S	G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions