Return to main results Retrieve Phyre Job Id

Job DescriptionP32684
Confidence100.00%DateThu Jan 5 11:50:08 GMT 2012
Rank6Aligned Residues166
% Identity31%Templated1vioa1
SCOP infoPseudouridine synthase Pseudouridine synthase Pseudouridine synthase RsuA/RluD
Resolution1.59

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80.........90...... ...100.........110.........120.........130.........140..
Predicted Secondary structure 


















..

















Query SS confidence 































. .













































Query Sequence  EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH. . SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD
Query Conservation       
  


 
           

 
 
  ..  
   




  





 
 

 

  
  
   
 
 
 
 
 
Alig confidence 



















..









..













































Template Conservation 

   





 
       ..       
       
  




  





 
     
  
      
 
 
 
 
 
Template Sequence  EEGQYFMLNKPQGCVCSNDD. . YPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLA
Template Known Secondary structure 




TT
BSS


..

BGGGGS
TTGGGG
SS


TT
S

TTS


S
Template Predicted Secondary structure 










..
























Template SS confidence 















































































   58.60.........70....... ..80.........90.........100.........110.........120.........130.....
 
   143......150.........160...... ...170.........180.........190.........200.........210..... ....
Predicted Secondary structure 











..















.



Query SS confidence 























. .
















































.



Query Sequence  KPITEEFIRGMSAGVPILGTVTKK. . CKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG. IPLG
Query Conservation 
      
  
  

         ..  
       
 
 
 


 




    

  
  
 

  
   
  .
  
Alig confidence 























..
















































.



Template Conservation 
             
                         
 


 



  
  

 

  
 
   
   
   
  
Template Sequence  DPVEENYSAACAEGILLRGEKEPTKPAKLEILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEG
Template Known Secondary structure  S


TT



TT
SS





SSSS


TTTT

TT

TT

TT
Template Predicted Secondary structure 



























Template SS confidence 















































































   138.140.........150.........160.........170.........180.........190.........200.........210.......
 
   220.........230..
Predicted Secondary structure 


Query SS confidence 












Query Sequence  EWRDLTDDELIDL
Query Conservation    
 
   
   
Alig confidence 












Template Conservation    
 
   
   
Template Sequence  EYRPLTQSEIEKL
Template Known Secondary structure 


T
Template Predicted Secondary structure 


Template SS confidence 












   218.220.........230
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions