Job Description P32684 Confidence 38.98% Date Thu Jan 5 11:50:08 GMT 2012 Rank 66 Aligned Residues 70 % Identity 17% Template c2exuA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain Resolution 2.23 Å

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		111	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		Q	G	L	I	F	L	.	T	N	H	G	D	L	V	N	K	I	L	R	A	G	N	D	H	E	K	E	Y	L	V	T	V	D	K	P	I	T	E	E	F	I	R	G	M	S	A	G	V	P	I	L	G	T	V	T	K	K	C	K	V	K	K	E	A	P	F	V	F	R	I	T	L	V	Q	G	L	N	R	Q	I
Query Conservation								.
Alig confidence								.																																															.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.
Template Sequence		E	G	L	V	G	M	C	K	P	T	K	S	W	V	A	K	W	L	S	V	D	H	S	I	A	G	M	Y	A	I	K	V	D	G	R	L	P	A	E	V	V	E	L	L	P	H	Y	K	P	R	D	G	S	.	.	.	.	.	.	.	.	.	G	S	A	T	I	W	G	V	R	C	R	P	G	K	E	K	E	L
Template Known Secondary structure								S		T	T	T							T	T		T	T	S		S									S								T	T		T	T				T	T	S		.	.	.	.	.	.	.	.	.	S											T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.										100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions