Job Description P32684 Confidence 100.00% Date Thu Jan 5 11:50:08 GMT 2012 Rank 3 Aligned Residues 223 % Identity 31% Template c1vioA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Resolution 1.59 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		S	V	R	L	N	K	Y	I	S	E	S	G	I	C	S	R	R	E	A	D	R	Y	I	E	Q	G	N	V	F	L	N	G	K	R	A	T	.	I	G	D	Q	V	K	P	G	D	V	V	K	V	N	G	Q	L	I	E	P	R	E	A	E	D	L	V	L	I	A	L	N	K	P	V	G	I	V	S	T	T	E	D
Query Conservation																																						.
Alig confidence																																						.																				.	.
Template Conservation																																																										.	.
Template Sequence		S	L	R	L	D	K	F	I	A	E	N	V	G	L	T	R	S	Q	A	T	K	A	I	R	Q	S	A	V	K	I	N	G	E	I	V	K	S	G	S	V	Q	I	S	Q	E	D	E	I	Y	F	E	D	E	L	L	T	.	.	W	I	E	E	G	Q	Y	F	M	L	N	K	P	Q	G	C	V	C	S	N	D	D
Template Known Secondary structure														T												T	T					T	T						T	T					T	T	S					T	T					.	.	S	S												T	T		B	S	S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		G	E	R	D	N	I	V	D	F	V	N	H	.	.	S	K	R	V	F	P	I	G	R	L	D	K	D	S	Q	G	L	I	F	L	T	N	H	G	D	L	V	N	K	I	L	R	A	G	N	D	H	E	K	E	Y	L	V	T	V	D	K	P	I	T	E	E	F	I	R	G	M	S	A	G	V	P	I	L	G	T
Query Conservation														.	.
Alig confidence		.	.											.	.
Template Conservation		.	.
Template Sequence		.	.	Y	P	T	I	Y	Q	F	F	D	Y	P	L	A	G	K	L	H	S	A	G	R	L	D	V	D	T	T	G	L	V	L	L	T	D	D	G	Q	W	S	H	R	I	T	S	P	K	H	H	C	E	K	T	Y	L	V	T	L	A	D	P	V	E	E	N	Y	S	A	A	C	A	E	G	I	L	L	R	G	E
Template Known Secondary structure		.	.			B	G	G	G	G	S		T	T	G	G	G	G				S	S				T	T									S											T	T	S											S	S				T	T												T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
				163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.																																																						.
Query SS confidence		.	.																																																						.
Query Sequence		.	.	V	T	K	K	C	K	V	K	K	E	A	P	F	V	F	R	I	T	L	V	Q	G	L	N	R	Q	I	R	R	M	C	E	H	F	G	Y	E	V	K	K	L	E	R	T	R	I	M	N	V	S	L	S	G	.	I	P	L	G	E	W	R	D	L	T	D	D	E	L	I	D	L
Query Conservation		.	.																																																						.
Alig confidence		.	.																																																						.
Template Conservation
Template Sequence		K	E	P	T	K	P	A	K	L	E	I	L	D	D	Y	N	V	N	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A	L	G	N	K	V	V	G	L	H	R	W	K	I	G	D	V	V	L	D	E	S	L	E	E	G	E	Y	R	P	L	T	Q	S	E	I	E	K	L
Template Known Secondary structure		S	S											S	S	S							S				T	T									T	T												T	T					T	T			T	T													T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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