Job Description P32684 Confidence 99.95% Date Thu Jan 5 11:50:08 GMT 2012 Rank 11 Aligned Residues 140 % Identity 20% Template c1v9fA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli Resolution 1.70 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.								.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.
Predicted Secondary structure																										.														.	.	.	.	.	.	.																													.	.
Query SS confidence																										.														.	.	.	.	.	.	.																													.	.
Query Sequence		R	E	A	E	D	L	V	L	I	A	L	N	K	P	V	G	I	V	S	T	T	E	D	G	.	E	R	D	N	I	V	D	F	V	N	H	S	K	.	.	.	.	.	.	.	R	V	F	P	I	G	R	L	D	K	D	S	Q	G	L	I	F	L	T	N	H	G	D	L	V	N	K	I	.	.	L	R	A	G	N
Query Conservation																										.														.	.	.	.	.	.	.																													.	.
Alig confidence																										.														.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		I	V	Y	E	D	E	D	I	I	I	I	N	K	P	R	D	L	V	V	H	P	G	A	G	N	P	D	G	T	V	L	N	A	L	L	H	Y	Y	P	P	I	A	D	V	P	R	A	G	I	V	H	R	L	D	K	D	T	T	G	L	M	V	V	A	K	T	V	P	A	Q	T	R	L	V	E	S	L	Q	R	R
Template Known Secondary structure							S	S								S	S			S	S		B	T	T	B	S	S	S	S										G	G	G	G	G	S	G	G	G	G	B						T	T									S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.														.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	H	E	K	E	Y	L	V	T	V	D	K	P	I	T	E	E	F	I	R	G	M	S	A	G	V	P	I	L	G	T	V	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	K	C	K	V	K	K	E	A	P	F	V	F	R	I	T	L	V	Q	G	L	N	R	Q	I	R	R	M	C	E	H	F	G	Y
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	T	R	E	Y	E	A	V	A	I	G	H	M	T	A	G	G	T	V	D	E	P	I	S	R	H	P	T	K	R	T	H	M	A	V	H	P	M	G	K	P	A	V	T	H	Y	R	I	M	E	H	F	R	V	H	T	R	L	R	L	R	L	E	T	G	R	T	H	Q	I	R	V	H	M	A	H	I	T	H
Template Known Secondary structure			S										S																S	S		T	T						T	T	S	B													S	S									S				T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		199	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	V
Template Known Secondary structure			B	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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