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Job DescriptionP32684
Confidence99.94%DateThu Jan 5 11:50:08 GMT 2012
Rank13Aligned Residues140
% Identity20%Templatec1qyuA_
PDB info PDB header:lyaseChain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80..... ....90...... ...100.........110.........120...... ...130.
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Query Sequence  REAEDLVLIALNKPVGIVSTTEDG. ERDNIVDFVNH. . . . . . . SKRVFPIGRLDKDSQGLIFLTNHGDLVNKI. . LRAGN
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Template Sequence  IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLXVVAKTVPAQTRLVESLQRR
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BTTBSSSS
GGGGGSGGGGB
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   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   132.......140...... ...150.........160.........170.........180.........190........
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Query Sequence  DHEKEYLVTVDKPIT. . . . . . . . . . . . . EEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGY
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Template Sequence  EITREYEAVAIGHXTAGGTVDEPISRHPTKRTHXAVHPMGKPAVTHYRIXEHFRVHTRLRLRLETGRTHQIRVHXAHITH
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   166...170.........180.........190.........200.........210.........220.........230.........240.....
 
   199200.
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Query Sequence  EVK
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Template Sequence  PLV
Template Known Secondary structure 
BT
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   246..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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