 |
Job Description | P77649 | Confidence | 16.26% | Date | Thu Jan 5 12:31:20 GMT 2012 |
Rank | 56 | Aligned Residues | 65 |
% Identity | 17% | Template | c2g5iB_ |
PDB info |
PDB header:ligase | Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase |
PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4
|
Resolution | 3.35 Å |
|
 |
  |   |
191 | . | . | . | . | . | . | . | |
. | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | |
|
. | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | K | V | R | Q | L | A | D | . |
F | A | I | R | H | Y | W | S | H | L | A | D | D | E | D | K | Y | R | L | W | F | S | D | V | V | A | R | . |
. |
T | A | S | L | I | A | Q | W | Q | T | V | G | F | A | H | G | V | M | N | T | D | N | M | S | L | L | G | L | T | L | D |
Query Conservation |   |
  |   |
|   |   |
|   |
| . |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
| . | . |
|
|   |
|
|
|   |
|
|   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |
|
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
| . |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |
Template Sequence |   |
E | R | K | A | K | Y | V | N | E | L | G | L | P | A | Y | D | A | H | V | L | T | L | T | K | E | M | S | D | F | F | E | S | T | I | E | H | G | A | D | V | K | L | T | S | N | W | L | . |
M | G | G | V | N | E | Y | L | N | K | N | Q | V | E | L | L | D | T | K | L | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | S |
|
|
|  |  |  |  |  |  |  | T | S | S |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  |  |  |  | . |  | T |  |  |  |  |  |  |  | T | T | T |
|
| T | T | T | S | S |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
298 | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | |
. | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|