Job Description P69451 Confidence 100.00% Date Thu Jan 5 12:11:41 GMT 2012 Rank 27 Aligned Residues 392 % Identity 22% Template c3ivrA_ PDB info PDB header:ligase Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase; PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009 Resolution 2.00 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	Q	S	L	V	D	M	F	E	Q	S	V	A	R	Y	A	D	Q	P	A	F	V	N	M	G	E	V	M	T	F	R	K	L	E	E	R	S	R	A	F	A	A	Y	L	Q	Q	G	L	G	L	K	K	G	D	R	V	A	L	M	M	P	N	L	L	Q	Y	P	V	A	L	F	G	I	L	R	A	G	M	I
Query Conservation
Alig confidence																																																	.
Template Conservation																																																	.
Template Sequence		H	D	F	T	L	A	D	V	Y	R	R	N	A	A	L	F	P	D	R	T	A	F	M	V	D	G	V	R	L	T	H	R	D	Y	L	A	R	A	E	R	L	A	S	G	L	L	R	.	D	G	V	H	T	G	D	R	V	A	I	L	S	Q	N	C	S	E	M	I	E	L	I	G	A	V	A	L	I	G	A	I
Template Known Secondary structure		T															S	T	T	S						T	T																						.	T	T			T	T									S														T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	N	V	N	P	L	Y	T	P	R	E	L	E	H	Q	L	N	D	S	G	A	S	A	I	V	I	V	S	N	F	A	H	T	L	E	K	V	V	D	K	T	A	V	Q	H	V	I	L	T	R	M	G	D	Q	L	S	T	A	K	G	T	V	V	N	F	V	V	K	Y	I	K	R	L	V	P	K	Y	H	L
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	P	V	N	Y	R	L	N	A	D	E	I	A	F	V	L	G	D	G	A	P	S	V	V	V	A	G	T	D	Y	R	D	I	V	A	G	V	L	P	S	L	G	G	V	K	K	A	Y	A	I	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	S																					S	T	T								G	G	G		S	S							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	A	I	S	F	R	S	A	L	H	N	G	Y	R	M	Q	Y	V	K	P	E	L	V	P	E	D	L	A	F	L	Q	Y	T	G	G	T	T	G	V	A	K	G	A	M	L	T	H	R	N	M	L	A	N	L	E	Q	V	N	A	T	Y	G	P	L	L	H	P	G	K	E	L	V	V	T	A	L	P	L	Y
Query Conservation
Alig confidence		.	.	.																																																																		.	.	.	.	.
Template Conservation		.	.	.																																																																		.	.	.	.	.
Template Sequence		.	.	.	G	S	G	P	F	A	P	F	K	D	L	A	S	D	T	P	F	S	A	P	E	F	G	A	A	D	G	F	V	I	I	H	T	A	A	G	R	P	R	G	A	L	I	S	Q	G	N	L	L	I	A	Q	S	S	L	V	D	A	W	R	L	T	E	A	D	.	.	.	.	.	V	N	L	G	M	L	P
Template Known Secondary structure		.	.	.			S	S				G	G	G	T				S									T	T	S																																	T	T			T	T		.	.	.	.	.						S
Template Predicted Secondary structure		.	.	.																																																																		.	.	.	.	.
Template SS confidence
					137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	F	A	L	T	I	N	C	L	L	F	I	E	L	G	G	Q	N	L	L	I	T	N	P	R	D	I	P	G	L	V	K	E	L	A	K	Y	P	F	T	A	I	T	G	V	N	T	L	F	N	A	L	L	N	N	K	E	F	Q	Q	L	D	F	S	S	L	H	L	S	A	G	G	G	M	P	V	Q	Q	V
Query Conservation
Alig confidence																																																																			.	.	.	.
Template Conservation																																																																			.	.	.	.
Template Sequence		L	F	H	V	T	G	L	G	L	M	L	T	L	Q	Q	A	G	G	A	S	V	I	A	A	K	F	D	P	A	Q	A	A	R	D	I	E	A	H	K	V	T	V	M	A	E	F	A	P	M	L	G	N	I	L	D	Q	A	A	P	A	Q	L	A	S	L	.	.	.	.	R	A	V	T	G	L	D	T	P	E	T
Template Known Secondary structure		T	T	S														T							S	S														T								T	T											G	G	G	G	T	T		.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	E	R	W	V	K	L	T	G	Q	Y	L	L	E	G	Y	G	L	T	E	C	A	P	L	V	S	V	N	P	Y	D	I	D	Y	H	S	G	S	I	G	L	P	V	P	S	T	E	A	K	L	V	D	D	D	D	N	E	V	P	P	G	Q	P	G	E	L	C	V	K	G	P	Q	V	M	L	G	Y	W	Q
Query Conservation
Alig confidence																																		.	.
Template Conservation																																		.	.
Template Sequence		I	E	R	F	E	A	T	C	P	N	A	T	F	W	A	T	F	G	Q	S	E	T	S	G	L	S	T	F	A	P	Y	R	.	.	D	R	P	K	S	A	G	R	P	L	F	W	R	T	V	A	V	V	D	A	E	D	R	P	L	P	P	G	E	V	G	E	I	V	L	R	G	P	T	V	F	K	G	Y	W	N
Template Known Secondary structure										T	T										G	G	G	T								G	G	.	.	G	S	T	T	S						T	T								T	T	S		B			T	T									S	T	T	S					T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	D	A	T	D	E	I	I	K	N	G	W	L	H	T	G	D	I	A	V	M	D	E	E	G	F	L	R	I	V	D	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	A	A	T	Q	H	A	F	R	N	G	W	H	H	T	G	D	M	G	R	F	D	A	D	G	Y	L	F	Y	A	G	R	A
Template Known Secondary structure										T	G	G	G	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.