Job Description P69451 Confidence 100.00% Date Thu Jan 5 12:11:41 GMT 2012 Rank 14 Aligned Residues 502 % Identity 22% Template c3gqwB_ PDB info PDB header:ligase Chain: B: PDB Molecule:fatty acid amp ligase; PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		V	P	T	E	I	N	P	D	R	Y	Q	S	L	V	D	M	F	E	Q	S	V	A	R	Y	A	D	Q	P	A	F	V	N	M	G	.	.	.	E	V	M	T	F	R	K	L	E	E	R	S	R	A	F	A	A	Y	L	Q	Q	G	L	G	L	K	K	G	D	R	V	A	L	M	M	P	N	L	L	Q	Y	P	V
Query Conservation																																				.	.	.
Alig confidence					.	.																														.	.	.																						.
Template Conservation					.	.																																																						.
Template Sequence		L	P	X	.	.	R	Y	A	D	F	P	T	L	V	D	A	L	D	Y	A	A	L	S	S	A	G	X	N	F	Y	D	R	R	C	Q	L	E	D	Q	L	E	Y	Q	T	L	K	A	R	A	E	A	G	A	K	R	L	L	S	.	L	N	L	K	K	G	D	R	V	A	L	I	A	E	T	S	S	E	F	V	E
Template Known Secondary structure					.	.			S			S	S									T	T	S	S								T	T																									T	.	T	T			T	T									S	S
Template Predicted Secondary structure					.	.																																																						.
Template SS confidence
		13	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	F	G	I	L	R	A	G	M	I	V	V	N	V	N	P	L	Y	T	P	R	E	L	E	H	Q	L	N	D	S	G	A	S	A	I	V	I	V	S	N	F	A	H	T	L	E	K	V	V	D	K	T	A	V	Q	H	V	I	L	T	R	M	G	D	Q	L	S	T	A	K	G	T	V	V	N	F	V	V	K
Query Conservation
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	F	F	A	C	Q	Y	A	G	L	V	A	V	P	L	A	I	P	S	W	S	A	K	L	Q	G	L	L	A	S	C	Q	P	A	A	I	I	T	G	D	E	W	L	P	L	V	N	A	A	T	H	D	N	P	E	L	H	V	L	S	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T																									S						S	T	T									T	T		S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	K	R	L	V	P	K	Y	H	L	P	D	A	I	S	F	R	S	A	L	H	N	G	Y	R	M	Q	Y	V	K	P	E	L	V	P	E	D	L	A	F	L	Q	Y	T	G	G	T	T	G	V	A	K	G	A	M	L	T	H	R	N	M	L	A	N	L	E	Q	V	N	A	T	Y	G	P	L	L	H	P	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	F	K	A	L	P	E	A	D	V	A	L	Q	R	P	V	P	N	D	I	A	Y	L	Q	Y	T	S	G	S	T	R	F	P	R	G	V	I	I	T	H	R	E	V	X	A	N	L	R	A	I	S	H	D	G	I	K	L	R	P	G	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S				S								T	T	S						G	G	G			S	S	S																					T	T	S				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																							.																															.	.	.
Query SS confidence																																							.																															.	.	.
Query Sequence		K	E	L	V	V	T	A	L	P	L	Y	H	I	F	A	L	T	I	N	C	L	L	F	I	E	L	G	G	Q	N	L	L	I	T	N	P	R	.	D	I	P	G	L	V	K	E	L	A	K	Y	P	F	T	A	I	T	G	V	N	T	L	F	N	A	L	L	N	N	.	.	.	K	E	F	Q	Q	L	D	F	S
Query Conservation																																							.																															.	.	.
Alig confidence																																							.																															.	.	.
Template Conservation
Template Sequence		R	C	V	S	W	L	P	F	Y	H	D	X	G	L	V	G	F	L	L	T	P	V	A	T	Q	L	S	V	D	Y	L	R	T	Q	D	F	A	X	R	P	L	Q	W	L	K	L	I	S	K	N	R	G	T	V	S	V	A	P	P	F	G	Y	E	L	C	Q	R	R	V	N	E	K	D	L	A	E	L	D	L	S
Template Known Secondary structure									T	T	S								T					T	T	T														S	T										T	T																	S							T	T				T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.							350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	H	L	S	A	G	G	G	M	P	V	Q	Q	V	V	A	E	R	W	V	K	L	T	.	.	.	.	.	.	G	Q	Y	L	L	E	G	Y	G	L	T	E	C	A	P	L	V	S	V	N	P	Y	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	W	R	V	A	G	I	G	A	E	P	I	S	A	E	Q	L	H	Q	F	A	E	C	F	R	Q	V	N	F	D	N	K	T	F	X	P	C	Y	G	L	A	E	N	A	L	A	V	S	F	S	D	E	A	S	G	V	V	V	N	E	V	D	R	D	I	L	E	Y	Q	G	K	A	V	A	P	G	A	E	T	R
Template Known Secondary structure		T								S	S																T	T	T			G	G	G								G	G	G	S	S		S					T	T																	S	B						S	S
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
			374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	Y	H	S	G	S	I	G	L	P	V	P	S	T	E	A	K	L	V	D	D	D	D	N	E	V	P	P	G	Q	P	G	E	L	C	V	K	G	P	Q	V	M	L	G	Y	W	Q	R	P	D	A	T	D	E	I	I	K	N	G	W	L	H	T	G	D	I	A	V	M	D	E	E	G	F	L	R	I	V	D
Query Conservation		.
Alig confidence		.																																																																					.
Template Conservation																																																																							.
Template Sequence		A	V	S	T	F	V	N	C	G	K	A	L	P	E	H	G	I	E	I	R	N	E	A	G	X	P	V	A	E	R	V	V	G	H	I	C	I	S	G	P	S	L	X	S	G	Y	F	G	D	Q	V	S	Q	D	E	I	A	A	T	G	W	L	D	T	G	D	L	G	Y	.	L	L	D	G	Y	L	Y	V	T	G
Template Known Secondary structure								B						T	T								T	T	S		B			T	T	B								S	T	T					B	T	T												S										.			T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530
Predicted Secondary structure																																																						.																		.
Query SS confidence																																																						.																		.
Query Sequence		R	K	K	D	M	I	L	V	S	G	F	N	V	Y	P	N	E	I	E	D	V	V	M	Q	H	P	G	V	Q	E	V	A	A	V	G	V	P	S	G	S	S	G	E	A	V	K	I	F	V	V	K	K	.	D	P	S	L	T	E	E	S	L	V	T	F	C	R	R	Q	L	.	T	G	Y	K	V	P	K	L	V
Query Conservation																																																						.																		.
Alig confidence																																									.	.												.																		.
Template Conservation																																									.	.
Template Sequence		R	I	K	D	L	I	I	I	R	G	R	N	I	W	P	Q	D	I	E	Y	I	A	E	Q	E	P	E	I	H	S	G	D	A	I	A	F	V	T	A	.	.	Q	E	K	I	I	L	Q	I	Q	C	R	I	S	D	E	E	R	R	G	Q	L	I	H	A	L	A	A	R	I	Q	S	E	F	G	V	T	A	A	I
Template Known Secondary structure			G	G	G					S	S														T	S	S	S			T	T	S							T	.	.	T	S																																S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.			.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
		531	.	.			.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		E	F	R	.	.	D	E	L	P	K	S	N	V	G	K	I	L	R	R	E	L	R	D	E	A	R	G	K	V
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		D	L	L	P	P	H	S	I	P	R	T	S	S	G	K	P	A	R	A	E	A	K	K	R	Y	Q	K	A	Y
Template Known Secondary structure						T	T	S	S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.