Job Description P69451 Confidence 100.00% Date Thu Jan 5 12:11:41 GMT 2012 Rank 5 Aligned Residues 493 % Identity 19% Template c3e7wA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains Resolution 2.28 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	V	D	M	F	E	Q	S	V	A	R	Y	A	D	Q	P	A	F	V	N	M	G	E	V	M	T	F	R	K	L	E	E	R	S	R	A	F	A	A	Y	L	Q	Q	G	L	G	L	K	K	G	D	R	V	A	L	M	M	P	N	L	L	Q	Y	P	V	A	L	F	G	I	L	R	A	G	M	I	V	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	L	H	A	I	Q	T	H	A	E	T	Y	P	Q	T	D	A	F	R	S	Q	G	Q	S	L	T	Y	Q	E	L	W	E	Q	S	D	R	A	A	A	A	I	Q	K	R	I	S	G	E	K	K	S	P	I	L	V	Y	G	H	M	E	P	H	M	I	V	S	F	L	G	S	V	K	A	G	H	P	Y	I	P
Template Known Secondary structure														S	T	T	S						T	T																				T	T	T	S		S	S	S									S	S															T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	P	L	Y	T	P	R	E	L	E	H	Q	L	N	D	S	G	A	S	A	I	V	I	V	S	N	F	A	H	T	L	E	K	V	V	D	K	T	A	V	Q	H	V	I	L	T	R	M	G	D	Q	L	S	T	A	K	G	T	V	V	N	F	V	V	K	Y	I	K	R	L	V	P	K	Y	H	L	P	D	A
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	L	S	I	P	S	E	R	I	A	K	I	I	E	S	S	G	A	E	L	L	I	H	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	I	D	A	V	G	Q	Q	I	Q	T
Template Known Secondary structure				T	T	S													T							S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T					S	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																																										.	110	.	.	.	.	.	.	.	.	.	120
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	F	R	S	A	L	H	N	G	Y	R	M	Q	Y	V	K	P	E	L	V	P	E	D	L	A	F	L	Q	Y	T	G	G	T	T	G	V	A	K	G	A	M	L	T	H	R	N	M	L	A	N	L	E	Q	V	N	A	T	Y	G	P	L	L	H	P	G	K	E	L	V	V	T	A	L	P	L	Y	H	I	F
Query Conservation
Alig confidence																																																																				.	.
Template Conservation																																																																				.	.
Template Sequence		V	S	A	E	E	L	L	E	N	E	G	G	S	V	S	Q	D	Q	W	V	K	E	H	E	T	F	Y	I	I	Y	T	S	G	S	T	G	N	P	K	G	V	Q	I	S	A	A	N	L	Q	S	F	T	D	W	I	C	A	D	F	P	V	S	G	G	K	I	.	.	F	L	N	Q	A	P	F	S	F	D	L	S
Template Known Secondary structure									T	S		S					G	G	G	S			T	T	S										T	T	S	S																						S	T	T	T	T	T			.	.					S		T	T	S	T
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	I	N	C	L	L	F	I	E	L	G	G	Q	N	L	L	I	T	N	P	R	D	I	P	G	L	V	K	E	L	A	K	Y	P	F	T	A	I	T	G	V	N	T	L	F	N	A	L	L	N	N	K	E	F	Q	Q	L	D	F	S	S	L	H	L	S	A	G	G	G	M	P	V	Q	Q	V	V	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	M	D	L	Y	P	C	L	Q	S	G	G	T	L	H	C	V	T	K	D	A	V	N	K	P	K	V	L	F	E	E	L	K	K	S	G	L	N	V	W	T	S	T	P	S	F	V	Q	M	C	L	M	D	P	G	F	S	Q	D	L	L	P	H	A	D	T	F	M	F	C	G	E	V	L	P	V	S	V	A	K
Template Known Secondary structure											T	T													S														S														T	S	T	T		S	T	T	T		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		344	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.					.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																													.	.	.	.
Query SS confidence								.																													.	.	.	.
Query Sequence		R	W	V	K	L	T	.	G	Q	Y	L	L	E	G	Y	G	L	T	E	C	A	P	L	V	S	V	N	P	Y	D	I	D	Y	H	S	.	.	.	.	G	S	I	G	L	P	V	P	S	T	E	A	K	L	V	D	D	D	D	N	E	V	P	P	G	Q	P	G	E	L	C	V	K	G	P	Q	V	M	L	G	Y
Query Conservation								.																													.	.	.	.
Alig confidence								.																													.	.	.	.
Template Conservation
Template Sequence		A	L	L	E	R	F	P	K	A	K	I	F	N	T	Y	G	P	T	E	A	T	V	A	V	T	S	V	E	I	T	N	D	V	I	S	R	S	E	S	L	P	V	G	F	A	K	P	D	M	N	I	F	I	M	D	E	E	G	Q	P	L	P	E	G	E	K	G	E	I	V	I	A	G	P	S	V	S	R	G	Y
Template Known Secondary structure								T	T										G	G	G	S	S		S											T	T		S	S				B				T	T								T	T	S		B			T	T									S	T	T	S				B
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		W	Q	R	P	D	A	T	D	E	I	I	K	.	.	.	N	G	W	L	H	T	G	D	I	A	V	M	D	E	E	G	F	L	R	I	V	D	R	K	K	D	M	I	L	V	S	G	F	N	V	Y	P	N	E	I	E	D	V	V	M	Q	H	P	G	V	Q	E	V	A	A	V	G	V	P	S	G	S	S	G	E
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		L	G	E	P	E	L	T	E	K	A	F	F	S	H	E	G	Q	W	A	Y	R	T	G	D	A	G	F	I	Q	D	G	Q	I	F	C	Q	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	F	H	V	R	Q	S	Q	Y	V	R	S	A	V	V	I	P	Y	Q	P	N	G	T	V	E
Template Known Secondary structure		T	T												S	S	S	S													T	T								S	S	S					T	T															S	T	T											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		496	.	.	.	500	.	.	.	.	.	.	.	.	.						510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		A	V	K	I	F	V	V	K	K	D	P	S	L	T	.	.	.	.	.	E	E	S	L	V	T	F	C	R	R	Q	L	T	G	Y	K	V	P	K	L	V	E	F	R	D	E	L	P	K	S	N	V	G	K	I	L	R	R	E	L	R	D	E	A	R	G	K	V	D	N
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.
Template Conservation
Template Sequence		Y	L	I	A	A	I	V	P	E	E	H	E	F	E	K	E	F	Q	L	T	S	A	I	K	K	E	L	A	A	S	L	P	A	Y	M	I	P	R	K	F	I	Y	Q	D	H	I	Q	M	T	A	N	G	K	I	D	R	K	R	I	G	E	E	V	L	V	R	S	H	H
Template Known Secondary structure															S	S																S		G	G	G	S		S						S				B		T	T	S		B														T
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.