Job Description P69451 Confidence 100.00% Date Thu Jan 5 12:11:41 GMT 2012 Rank 29 Aligned Residues 339 % Identity 17% Template c2y4oA_ PDB info PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate Resolution 1.90 Å

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		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	M	Q	Y	V	K	P	E	L	V	P	E	D	L	A	F	L	Q	Y	T	G	G	T	T	G	V	A	K	G	A	M	L	T	H	R	N	M	L	A	N	L	E	Q	V	N	A	T	Y	G	P	L	L	H	P	G	K	E	L	V	V	T	A	L	P	L	Y	H	I	F	A	L	T	I	N	C	L	L	F	I
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence		D	N	Y	P	F	G	L	F	A	V	P	R	E	Q	V	V	R	V	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	A	R	D	I	D	T	W	A	N	V	T	A	R	S	I	R	A	A	G	G	R	P	G	D	T	L	H	N	A	F	G	Y	G	L	F	T	G	G	L	.	G	I	H	Y	G	A
Template Known Secondary structure		T	T	T	T	T	T	T		S	S		G	G	G										S	S	S	S																									T	T			T	T							S			S	S	S					.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		E	L	G	G	Q	N	L	L	I	T	N	P	R	D	I	P	G	L	V	K	E	L	A	K	Y	P	F	T	A	I	T	G	V	N	T	L	F	N	A	L	L	N	N	K	E	F	Q	Q	L	D	F	.	.	S	S	L	H	L	S	A	G	G	G	M	P	V	Q	Q	V	V	A	E	R	W	V	K	L	T	G	Q
Query Conservation																																																					.	.
Alig confidence																																																					.	.
Template Conservation
Template Sequence		E	R	L	G	C	M	V	V	P	M	S	G	G	Q	T	E	K	Q	V	Q	L	I	R	D	F	E	P	K	I	I	L	V	T	P	S	Y	M	L	N	L	I	D	E	M	V	R	Q	G	M	D	P	A	E	S	S	L	K	I	G	I	F	G	A	E	P	W	T	Q	A	L	R	N	E	V	E	T	R	V	G	I
Template Known Secondary structure					T								S																S																			T	T			G	G	G	S	S								S	S															T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	L	E	G	Y	G	L	T	E	C	A	P	L	V	S	V	N	P	Y	D	I	D	Y	H	S	G	S	I	G	L	P	V	P	S	T	E	A	K	L	V	D	D	D	D	N	E	V	P	P	G	Q	P	G	E	L	C	V	K	G	P	Q	V	M	L	G	Y	W	Q	R	P	D	A	T	D	E	I	I	K	N
Query Conservation
Alig confidence																							.																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	C	E	C	V	.	E	T	K	D	G	P	V	I	W	E	D	H	F	Y	P	E	I	I	D	P	V	T	G	E	V	L	P	D	G	S	Q	G	E	L	V	F	T	S	L	T	K	E	A	M	P	V	I	R	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	T	T									T	.	T	T			S					T	T	T								T	T	T			B			T	T										S	S		S	S	S			S	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.							.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																																																										.	.
Query SS confidence																	.	.	.	.	.	.																																																										.	.
Query Sequence		G	W	L	H	T	G	D	I	A	V	M	D	E	E	G	.	.	.	.	.	.	F	L	R	I	V	D	R	K	K	D	M	I	L	V	S	G	F	N	V	Y	P	N	E	I	E	D	V	V	M	Q	H	P	G	V	Q	E	V	A	A	V	G	V	P	S	G	S	S	G	E	A	V	K	I	F	V	V	K	.	.
Query Conservation																	.	.	.	.	.	.																																																										.	.
Alig confidence		.	.														.	.	.	.	.	.																																																										.	.
Template Conservation		.	.
Template Sequence		.	.	Y	R	T	R	D	L	T	A	L	L	P	P	T	A	R	A	M	R	R	L	A	K	I	T	G	R	S	D	D	M	L	I	V	R	G	V	N	V	F	P	S	Q	I	E	E	I	V	V	A	L	P	L	L	S	G	Q	F	Q	I	T	L	S	R	D	G	H	M	D	R	L	D	L	A	V	E	L	R	S
Template Known Secondary structure		.	.													S	S	S	S	S										S	S						T	T														T	S	T	T													T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
						504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.				.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																						.	.	.
Query SS confidence		.	.	.	.																						.	.	.
Query Sequence		.	.	.	.	K	D	P	S	L	T	E	E	S	L	V	T	F	C	R	R	Q	L	T	G	Y	.	.	.	K	V	P	K	L	V	E	F	R	D	E	L	P	K	S	N	V	G	K	I	L	R
Query Conservation		.	.	.	.																						.	.	.
Alig confidence		.	.	.	.																						.	.	.
Template Conservation
Template Sequence		E	A	A	A	S	V	T	D	G	E	R	A	A	L	A	R	E	L	Q	H	R	I	K	T	M	V	G	V	S	S	G	V	T	V	L	A	A	G	G	I	P	A	T	A	T	G	K	A	R	R
Template Known Secondary structure					T	T																					T											T	T		S				T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions