Job Description P69451 Confidence 100.00% Date Thu Jan 5 12:11:41 GMT 2012 Rank 13 Aligned Residues 482 % Identity 20% Template c1amuB_ PDB info PDB header:peptide synthetase Chain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine Resolution 1.90 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	I	N	P	D	R	Y	Q	S	L	V	D	M	F	E	Q	S	V	A	R	Y	A	D	Q	P	A	F	V	N	M	G	E	V	M	T	F	R	K	L	E	E	R	S	R	A	F	A	A	Y	L	Q	Q	G	L	G	L	K	K	G	D	R	V	A	L	M	M	P	N	L	L	Q	Y	P	V	A	L	F	G	I
Query Conservation
Alig confidence																																																							.
Template Conservation																																																							.
Template Sequence		T	K	A	E	Y	P	R	D	K	T	I	H	Q	L	F	E	E	Q	V	S	K	R	P	N	N	V	A	I	V	C	E	N	E	Q	L	T	Y	H	E	L	N	V	K	A	N	Q	L	A	R	I	F	I	E	.	K	G	I	G	K	D	T	L	V	G	I	M	M	E	K	S	I	D	L	F	I	G	I	L	A	V
Template Known Secondary structure								T	T															T	T	S						T	T																						.		T			T	T									S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	A	G	M	I	V	V	N	V	N	P	L	Y	T	P	R	E	L	E	H	Q	L	N	D	S	G	A	S	A	I	V	I	V	S	N	F	A	H	T	L	E	K	V	V	D	K	T	A	V	Q	H	V	I	L	T	R	M	G	D	Q	L	S	T	A	K	G	T	V	V	N	F	V	V	K	Y	I	K	R	L
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	A	G	G	A	Y	V	P	I	D	I	E	Y	P	K	E	R	I	Q	Y	I	L	D	D	S	Q	A	R	M	L	L	T	Q	K	H	L	V	H	L	I	H	N	Q	F	N	G	Q	V	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T								T	T	S															S						G	G	G	G	G	G	G						S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	K	Y	H	L	P	D	A	I	S	F	R	S	A	L	H	N	G	Y	R	M	Q	Y	V	K	P	E	L	V	P	E	D	L	A	F	L	Q	Y	T	G	G	T	T	G	V	A	K	G	A	M	L	T	H	R	N	M	L	A	N	L	E	Q	V	N	A	T	Y	G	P	L	L	H	P	G	K	E	L	V	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	E	D	T	I	K	I	R	E	G	T	N	L	H	V	P	S	K	S	T	D	L	A	Y	V	I	Y	T	N	P	K	G	T	M	L	E	H	K	G	I	S	N	L	K	V	F	F	E	N	S	L	N	V	T	E	K	D	R	.	.	I	G	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	G	G	G	S			S								T	T	S																													T	S				T	T			.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template SS confidence
																		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	P	L	Y	H	I	F	A	L	T	I	N	C	L	L	F	I	E	L	G	G	Q	N	L	L	I	T	N	P	R	D	I	P	G	L	V	K	E	L	A	K	Y	P	F	T	A	I	T	G	V	N	T	L	F	N	A	L	L	N	N	K	E	F	Q	Q	L	D	F	S	S	L	H	L	S	A	G	G	G
Query Conservation
Alig confidence																																																												.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		F	A	S	I	S	F	D	A	S	V	W	E	M	F	M	A	L	L	T	G	A	S	L	Y	I	I	L	K	D	T	I	N	D	F	V	K	F	E	Q	Y	I	N	Q	K	E	I	T	V	I	T	L	P	P	T	Y	V	V	H	.	.	.	.	.	.	L	D	P	E	R	I	L	S	I	Q	T	L	I	T	A	G
Template Known Secondary structure			S		T	T	S	T											T	T	T												T												T	T												T	T	.	.	.	.	.	.	S		T	T	T			S		S						S
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.							.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	V	Q	Q	V	V	A	E	R	W	V	K	L	T	G	Q	Y	L	L	E	G	Y	G	L	T	E	C	A	P	L	V	S	V	N	P	Y	D	I	D	Y	H	S	G	S	I	G	L	P	V	P	S	T	E	A	K	L	V	D	D	D	D	N	E	V	P	P	G	Q	P	G	E	L	C	V	K	G	P	Q	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	T	S	P	S	L	V	N	K	W	K	E	K	V	T	Y	I	N	A	Y	G	P	T	E	T	T	I	C	A	T	T	W	V	A	T	K	E	T	I	G	H	S	V	P	I	G	A	P	I	Q	N	T	Q	I	Y	I	V	D	E	N	L	Q	L	K	S	V	G	E	A	G	E	L	C	I	G	G	E	G	L
Template Known Secondary structure		S											T	T	T	S									G	G	G	S	S		S							S	S				S	S				B				T	T								T	T	S		B			T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.								.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.
Query Sequence		M	L	G	Y	W	Q	R	P	D	A	T	D	E	I	I	K	N	G	.	.	.	.	.	.	.	W	L	H	T	G	D	I	A	V	M	D	E	E	G	F	L	R	I	V	D	R	K	K	D	M	I	L	V	S	G	F	N	V	Y	P	N	E	I	E	D	V	V	M	Q	H	P	G	V	Q	E	V	A	A	V	G
Query Conservation																				.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	G	Y	W	K	R	P	E	L	T	S	Q	K	F	V	D	N	P	F	V	P	G	E	K	L	Y	K	T	G	D	Q	A	R	W	L	S	D	G	N	I	E	Y	L	G	R	I	D	N	Q	V	K	I	R	G	H	R	V	E	L	E	E	V	E	S	I	L	L	K	H	M	Y	I	S	E	T	A	V	S	V
Template Known Secondary structure						T	T													S	S	S	T	T	S													T	T	S								G	G	G					T	T														T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	S	G	S	S	G	E	A	V	K	I	F	V	V	K	K	D	P	S	L	T	E	E	S	L	V	T	F	C	R	R	Q	L	T	G	Y	K	V	P	K	L	V	E	F	R	D	E	L	P	K	S	N	V	G	K	I	L	R	R	E	L	R	D
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		H	K	D	H	Q	E	Q	P	Y	L	C	A	Y	F	V	S	E	.	K	H	I	P	L	E	Q	L	R	Q	F	S	S	E	E	L	P	T	Y	M	I	P	S	Y	F	I	Q	L	D	K	M	P	L	T	S	N	G	K	I	D	R	K	Q	L	P	E
Template Known Secondary structure					T	T	S											S	.	S															S		G	G	G	S		S						S	S			B		T	T	S	S	B		G	G	G	S
Template Predicted Secondary structure																			.
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.