Job Description P76585 Confidence 99.79% Date Thu Jan 5 12:24:52 GMT 2012 Rank 21 Aligned Residues 296 % Identity 15% Template c3q75A_ PDB info PDB header:transferase Chain: A: PDB Molecule:farnesyltransferase alpha subunit; PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpt-ii and tkcvvm peptide Resolution 2.14 Å

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		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.			.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		G	N	I	V	L	S	Y	Q	E	H	Q	P	Q	A	L	P	L	P	D	V	A	K	A	P	L	A	A	Q	D	I	T	S	T	D	E	A	W	F	I	G	Q	H	L	E	Q	Y	H	H	A	.	.	S	R	S	P	F	D	Y	Y	L	R	G	V	A	L	D	P	L	D	Y	R	C	N	L	A	L	A	M	L	E
Query Conservation																																																			.	.
Alig confidence																																																			.	.
Template Conservation
Template Sequence		T	Y	I	P	M	S	Q	R	R	S	W	A	D	V	K	P	I	M	Q	D	D	G	P	N	P	V	V	P	I	M	Y	S	E	E	Y	K	D	A	M	D	Y	F	R	A	I	A	A	K	E	E	K	S	E	R	A	L	E	L	T	E	I	I	V	R	M	N	P	A	H	Y	T	V	W	Q	Y	R	F	S	L	L
Template Known Secondary structure						G	G	G		G	G	G	T	T										S	S		S	S																						T			S															T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		506	.	.	.	510		.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550			.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
Predicted Secondary structure							.																																									.	.																																.
Query SS confidence							.																																									.	.																																.
Query Sequence		Y	N	R	A	D	.	F	P	Q	A	V	A	Y	A	T	Q	A	L	K	R	A	H	A	L	N	K	N	P	Q	C	G	Q	A	S	L	I	R	A	S	A	Y	E	R	Q	G	Q	.	.	Y	Q	Q	A	E	E	D	F	W	R	A	V	W	S	G	N	S	K	A	G	G	Y	Y	G	L	A	R	L	A	A	R	.
Query Conservation							.																																									.	.																																.
Alig confidence							.																.	.	.	.	.	.																				.	.																																.
Template Conservation																							.	.	.	.	.	.
Template Sequence		T	S	L	N	K	S	L	E	D	E	L	R	L	M	N	E	F	A	V	Q	N	.	.	.	.	.	.	L	K	S	Y	Q	V	W	H	H	R	L	L	L	L	D	R	I	S	P	Q	D	P	V	S	E	I	E	Y	I	H	G	S	L	L	P	D	P	K	N	Y	H	T	W	A	Y	L	H	W	L	Y	S	H	F
Template Known Secondary structure				T	T																	T	.	.	.	.	.	.	T	T																		S													T	S	S		T	T
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
									582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	N	G	N	F	D	A	G	L	D	F	C	Q	Q	S	L	R	A	C	P	T	N	Q	E	V	L	C	L	H	N	L	L	L	V	L	S	G	R	Q	D	N	A	R	V	Q	R	E	K	L	L	R	D	Y	P	L	N	A	T	L	W	W	L	N	W	F	D	G	R	S	E	S	A	L	A
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	L	G	R	I	S	E	A	Q	W	G	S	E	L	D	W	C	N	E	M	L	R	V	D	G	R	N	N	S	A	W	G	W	R	W	Y	L	R	V	S	R	P	G	A	E	T	S	S	R	S	L	Q	D	E	L	I	Y	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T																						T	T													T	T	S	T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	R	G	L	C	Q	G	R	D	V	N	A	L	M	T	A	G	Q	L	I	N	W	G	M	P	T	L	A	A	E	M	L	N	A	L	D	C	Q	R	T	L	P	L	Y	L	Q	A	S	L	L	P	K	A	E	R	G	E	L	V	A	K	A	I	D	V	F	P	Q	F	V	R	F	P	N	T	L	E	E	V
Query Conservation
Alig confidence		.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	K	S	I	H	L	I	P	H	N	V	S	A	W	N	Y	L	R	G	F	L	K	H	F	S	L	P	L	V	P	I	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	P	Y	T	A	F	P	M	P	S	D
Template Known Secondary structure		.	.	.							T	T															T	T			S	G	G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G	G
Template Predicted Secondary structure		.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.																																	.	.	.	.	.	.	.	.	260	.	.	.
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.		770	.	.	.	.	.	.	.	.	.	780	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		A	A	L	E	S	I	E	E	C	W	F	A	R	H	L	L	A	C	F	Y	Y	N	K	R	S	Y	N	K	A	I	A	F	W	Q	R	.	C	V	E	M	S	P	E	F	A	D	G	W	R	G	L
Query Conservation																																					.
Alig confidence																																					.
Template Conservation
Template Sequence		L	P	E	D	T	P	L	P	V	P	L	A	L	E	Y	L	A	D	S	F	I	E	Q	N	R	V	D	D	A	A	K	V	F	E	K	L	S	S	E	Y	D	Q	M	R	A	G	Y	W	E	F	R
Template Known Secondary structure				S	S			S																T	T															T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions