Job Description P76585 Confidence 99.66% Date Thu Jan 5 12:24:52 GMT 2012 Rank 28 Aligned Residues 256 % Identity 11% Template c3mv3B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 3.25 Å

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		754	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.																			.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Y	N	K	R	S	Y	N	K	A	I	A	F	W	Q	R	C	V	E	M	S	P	E	F	A	D	G	W	R	G	L	A	I	H	A	W	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	D	Y	E	L	A	A	R	Y	L	D	N	A	Y	Q	L	A	P	Q	D	A	R	L
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	Y	T	G	N	F	V	Q	C	L	Q	E	I	E	K	F	S	K	V	T	D	N	T	L	L	F	Y	K	A	K	T	L	L	A	L	G	Q	Y	Q	S	Q	D	P	T	S	K	L	G	K	V	L	D	L	Y	V	Q	F	L	D	T	K	N	I	E	E	L	E	N	L	L	K	D	K	Q	N	S	P	Y	E
Template Known Secondary structure				T	T	T											T	S	T	T																	S	S							S		S	T	T												T	S	S								T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		816	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.			.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		L	F	E	R	D	L	L	D	K	L	S	G	A	T	P	E	K	R	L	A	R	L	E	N	N	L	E	I	.	.	A	L	K	R	D	D	M	T	A	E	L	L	N	L	W	H	L	T	G	Q	A	D	K	A	A	D	I	L	A	T	R	K	F	H	P	W	E	G	G	E	G	K	V	T	S	Q	F	I	L	N
Query Conservation																														.	.
Alig confidence															.															.	.																																									.
Template Conservation															.																																																									.
Template Sequence		L	Y	L	L	A	T	A	Q	A	I	L	G	D	.	L	D	K	S	L	E	T	C	V	E	G	I	D	N	D	E	A	E	G	T	T	E	L	L	L	L	A	I	E	V	A	L	L	N	N	N	V	S	T	A	S	T	I	F	D	N	Y	T	N	A	I	E	D	T	V	S	.	G	D	N	E	X	I	L	N	L
Template Known Secondary structure													T		.													T	T	T	T	S	S	S															T	T														T	T		T	T	T			.	S	S	T
Template Predicted Secondary structure															.																																																									.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.
		894	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	R	A	W	Q	H	L	D	A	R	Q	P	Q	Q	A	C	E	L	L	H	A	A	L	H	Y	P	E	N	L	S	E	G	R	L	P	G	Q	T	D	N	D	I	W	F	W	Q	A	I	C	A	N	A	Q	G	D	E	T	E	A	T	R	C	L	R	L	A	A	T	G	D	R	T	I	N	I	H	S	Y
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	S	Y	I	K	F	A	T	N	K	E	T	A	T	S	N	F	Y	Y	Y	E	E	L	S	Q	T	F	P	T	.	.	.	.	.	.	.	.	.	.	.	W	K	T	Q	L	G	L	L	N	L	H	L	Q	Q	R	N	I	A	E	A	Q	G	I	V	E	L	L	L	S	D	Y	Y	S	V	E	Q	K	E	N
Template Known Secondary structure												T	T	T	T	T													S		S	.	.	.	.	.	.	.	.	.	.	.														T	T														S					T	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.												.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		974	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	D	Q	P	V	D	Y	L	F	W	Q	G	M	A	L	R	L	L	G	E	Q	Q	T	A	Q	Q	L	F	S	E	M	K	Q	W	A	Q	E	M	A	K	T	S	I	E	A	D	F	F	A	V
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		A	V	L	Y	K	P	T	F	L	A	N	Q	I	T	L	A	L	X	Q	G	L	.	.	D	T	E	D	L	T	N	Q	L	V	K	L	D	H	E	H	A	F	I	K	H	H	Q	E	I	D	A	K
Template Known Secondary structure				T	T															T	T		.	.	T	T										T	T			S
Template Predicted Secondary structure																							.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions