Job Description P76585 Confidence 99.88% Date Thu Jan 5 12:24:52 GMT 2012 Rank 8 Aligned Residues 296 % Identity 9% Template c3hymB_ PDB info PDB header:cell cycle, ligase Chain: B: PDB Molecule:cell division cycle protein 16 homolog; PDBTitle: insights into anaphase promoting complex tpr subdomain2 assembly from a cdc26-apc6 structure Resolution 2.80 Å

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		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	Y	R	C	N	L	A	L	A	M	L	E	Y	N	R	A	D	F	P	Q	A	V	A	Y	A	T	Q	A	L	K	R	A	H	A	L	N	K	N	P	Q	C	G	Q	A	S	L	I	R	A	S	A	Y	E	R	Q	G	Q	Y	Q	Q	A	E	E	D	F	W	R	A	V	W	S	G	N	S	K	A	G	G	Y
Query Conservation
Alig confidence																																			.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		E	N	L	D	V	V	V	S	L	A	E	R	H	Y	Y	N	C	D	F	K	X	C	Y	K	L	T	S	V	V	X	E	K	D	.	.	.	.	.	.	P	F	H	A	S	C	L	P	V	H	I	G	T	L	V	E	L	N	K	A	N	E	L	F	Y	L	S	H	K	L	V	D	L	Y	P	S	N	P	V	S	W
Template Known Secondary structure					T	T											T	T																	.	.	.	.	.	.	T	T		T	T	T												T																	T	T	S	T
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.							.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		573	.	.	.	.	.	.	580	.	.	.		.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.					.	.	.	.	.	.
Predicted Secondary structure													.																																																											.	.	.	.
Query SS confidence													.																																																											.	.	.	.
Query Sequence		Y	G	L	A	R	L	A	A	R	N	G	.	N	F	D	A	G	L	D	F	C	Q	Q	S	L	R	A	C	P	T	N	Q	E	V	L	C	L	H	N	L	L	L	V	L	S	G	R	Q	D	N	A	R	V	Q	R	E	K	L	L	R	D	Y	P	L	N	A	T	L	W	W	.	.	.	.	L	N	W	F	D	G
Query Conservation													.																																																											.	.	.	.
Alig confidence													.																																																											.	.	.	.
Template Conservation
Template Sequence		F	A	V	G	C	Y	Y	L	X	V	G	H	K	N	E	H	A	R	R	Y	L	S	K	A	T	T	L	E	K	T	Y	G	P	A	W	I	A	Y	G	H	S	F	A	V	E	S	E	H	D	Q	A	X	A	A	Y	F	T	A	A	Q	L	X	K	G	C	H	L	P	X	L	Y	I	G	L	E	Y	G	L	T	N
Template Known Secondary structure											S		S														T	T		T	T		T														T																T	T	T		S													T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		648	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	E	S	A	L	A	Q	W	R	G	L	C	Q	G	R	D	V	N	A	L	M	T	A	G	Q	L	I	N	W	G	M	P	T	L	A	A	E	M	L	N	A	L	D	C	Q	R	T	L	P	L	Y	L	Q	A	S	L	L	P	K	A	E	R	G	E	L	V	A	K	A	I	D	V	F	P	Q	F	V	R	F
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	S	K	L	A	E	R	F	F	S	Q	A	L	S	I	A	P	E	D	P	F	V	X	H	E	V	G	V	V	A	F	Q	N	G	E	W	K	T	A	E	K	W	F	L	D	A	L	E	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T		T	T															T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		728	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	T	L	E	E	V	A	A	L	E	S	I	E	E	C	W	F	A	R	H	L	L	A	C	F	Y	Y	N	K	R	S	Y	N	K	A	I	A	F	W	Q	R	C	V	E	M	S	P	E	F	A	D	G	W	R	G	L	A	I	H	A	W	N	K	Q	H	D	Y	E	L	A	A	R	Y	L	D	N	A	Y	Q
Query Conservation
Alig confidence		.	.	.	.																																																							.
Template Conservation		.	.	.	.																																																							.
Template Sequence		.	.	.	.	K	A	I	G	N	E	V	T	V	D	K	W	E	P	L	L	N	N	L	G	H	V	C	R	K	L	K	K	Y	A	E	A	L	D	Y	H	R	Q	A	L	V	L	I	P	Q	N	A	S	T	Y	S	A	I	G	.	Y	I	H	S	L	X	G	N	F	E	N	A	V	D	Y	F	H	T	A	L	G
Template Known Secondary structure		.	.	.	.	T	T	T	S		S		T	T	T	T															T	T																S	T	T		S								.							T											T	T	T	T
Template Predicted Secondary structure		.	.	.	.																																																							.
Template SS confidence
						433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		808	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	P	Q	D	A	R	L	L	F	E	R	D	L	L	D	K	L	S	G	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	R	D	D	T	F	S	V	T	X	L	G	H	C	I	E	X	Y	I	G	D
Template Known Secondary structure		T		S															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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