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Job DescriptionP76585
Confidence98.28%DateThu Jan 5 12:24:52 GMT 2012
Rank113Aligned Residues212
% Identity10%Templatec3e4bD_
PDB info PDB header:protein bindingChain: D: PDB Molecule:algk; PDBTitle: crystal structure of algk from pseudomonas fluorescens wcs374r
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   742.......750.........760.........770... ......780.........790.........800.........810.........820
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Query Sequence  ECWFARHLLACFYYNKRSYNKAIAFWQRCVEM. SPEFADGWRGLAIHAWNKQHDYELAARYLDNAYQLAPQDARLLFERD
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Template Sequence  GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKQPEQQAELLKQMEAGVSRGTVTAQRVDSVA
Template Known Secondary structure  T
TTS
TTT
TTT
TT

GGGT
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   139140.........150.........160.........170.........180.........190.........200.........210........
 
   821........830.........840.........850.........860.... .....870.........880.........890.......
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Query Sequence  LLDKLSGATPEKRLARLENNLEIALKRDDMTAELLNLWHLTGQA. . . DKAADILATRKFHPWEGGEGKVTSQFILNQLLR
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Template Sequence  RVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDN. . . . . . . . . . . GRAADQPRAELLL
Template Known Secondary structure  T
TTSSS

TTTST
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   221........230.........240.........250.........260.........270...... ...280.........
 
   898.900.... .....910.........920.........930.........940....... ..950.........960.........
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Query Sequence  AWQHLDA. . . . RQPQQACELLHAALHYPENLSEGRLPGQTDNDIWFWQAICANA. . . . QGDETEATRCLRLAATGDRTIN
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Template Sequence  GKLYYEGKWVPADAKAAEAHFEKA. . . . . . . . . . . . . VGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR. . . . . .
Template Known Secondary structure 
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   290.........300.........310... ......320.........330.........340.........350
 
   970.........980.........
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Query Sequence  IHSYYNDQPVDYLFWQGMAL
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Template Sequence  . . . . . . NGQNSADFAIAQLF
Template Known Secondary structure  ......TT
TTT
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   351........360....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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