Job Description P76585 Confidence 99.23% Date Thu Jan 5 12:24:52 GMT 2012 Rank 74 Aligned Residues 174 % Identity 19% Template c2yhcA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:upf0169 lipoprotein yfio; PDBTitle: structure of bamd from e. coli Resolution 1.80 Å

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		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.				.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		S	T	D	E	A	W	F	I	G	Q	H	L	E	Q	Y	H	H	A	S	R	S	P	F	D	Y	Y	L	R	G	V	A	L	D	P	L	D	.	.	.	Y	R	C	N	L	A	L	A	M	L	E	Y	N	R	A	D	F	P	Q	A	V	A	Y	A	T	Q	A	L	K	R	A	H	A	L	N	K	N	P	Q	C	G
Query Conservation																																						.	.	.
Alig confidence																.																						.	.	.																																			.	.	.
Template Conservation																.																																																											.	.	.
Template Sequence		P	P	N	E	I	Y	A	T	A	Q	Q	K	L	Q	.	D	G	N	W	R	Q	A	I	T	Q	L	E	A	L	D	N	R	Y	P	F	G	P	Y	S	Q	Q	V	Q	L	D	L	I	Y	A	Y	Y	K	N	A	D	L	P	L	A	Q	A	A	I	D	R	F	I	R	L	N	P	T	H	.	.	.	P	N	I	D
Template Known Secondary structure																.		T																	T	T	S	T	T															T	T																	T	T		.	.	.	T	T
Template Predicted Secondary structure																.																																																											.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.					.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.																		.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure																		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	S	L	I	R	A	S	A	Y	E	R	Q	G	Q	Y	.	.	.	.	Q	Q	A	E	E	D	F	W	R	A	V	W	S	G	N	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	G	Y	Y	G	L	A	R	L	A	A	R	N	G	N	F	D	A	G	L	D	F	C	Q	Q
Query Conservation																		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	M	Y	M	R	G	L	T	N	M	A	L	D	D	D	P	Q	Q	A	R	A	A	F	S	D	F	S	K	L	V	R	G	Y	P	N	S	Q	Y	T	T	D	A	T	K	R	L	V	F	L	K	D	R	L	A	K	Y	E	Y	S	V	A	E	Y	Y	T	E	R	G	A	W	V	A	V	V	N	R	V	E	G
Template Known Secondary structure																																	T	T		T	T		T	T																														T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		595	.	.	.	.	600	.	.	.	.				.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		S	L	R	A	C	P	T	N	Q	E	.	.	.	V	L	C	L	H	N	L	L	L	V	L	S	G	R	Q	D	N	A	R	V	Q	R	E	K	L	L	R	D	Y	P	L	N
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		M	L	R	D	Y	P	D	T	Q	A	T	R	D	A	L	P	L	M	E	N	A	Y	R	Q	M	Q	M	N	A	Q	A	E	K	V	A	K	I	I	A	A	N	S	S	N	T
Template Known Secondary structure						S	T	T	S																	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions