Job Description P76585 Confidence 99.60% Date Thu Jan 5 12:24:52 GMT 2012 Rank 31 Aligned Residues 165 % Identity 13% Template c2r5sB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633 Resolution 2.14 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	W	F	I	G	Q	H	L	E	Q	Y	H	H	A	S	R	S	P	F	D	Y	Y	L	R	G	V	A	L	D	P	L	D	Y	R	C	N	L	A	L	A	M	L	E	Y	N	R	A	D	F	P	Q	A	V	A	Y	A	T	Q	A	L	K	R	A	H	A	L	N	K	N	P	Q	C	G	Q	A	S	L	I
Query Conservation
Alig confidence																																																																			.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.
Template Sequence		D	E	Q	L	L	K	Q	V	S	E	L	L	Q	Q	G	E	H	A	Q	A	L	N	V	I	Q	T	L	S	D	E	L	Q	S	R	G	D	V	K	L	A	K	A	D	C	L	L	E	T	K	Q	F	E	L	A	Q	E	L	L	A	T	I	P	L	E	Y	.	.	.	.	.	.	Q	D	N	S	Y	K	S	L	I
Template Known Secondary structure			T	T											T	T												S						T	S														T	T										T	T			G	G	G	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.							.	180	.	.	.	.	.	.	.
		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.			.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		R	A	S	A	Y	E	R	Q	G	Q	Y	Q	Q	A	E	E	D	F	W	R	A	V	W	S	G	N	S	K	A	G	G	Y	Y	G	L	A	R	L	A	A	R	N	G	N	F	D	A	G	L	D	F	C	Q	Q	S	L	R	A	C	P	T	.	.	N	Q	E	V	L	C	L	H	N	L	L	L	V	L	S	G	R
Query Conservation																																																															.	.
Alig confidence																																																															.	.
Template Conservation
Template Sequence		A	K	L	E	L	H	Q	Q	A	A	E	S	P	E	L	K	R	L	E	Q	E	L	A	A	N	P	D	N	F	E	L	A	C	E	L	A	V	Q	Y	N	Q	V	G	R	D	E	E	A	L	E	L	L	W	N	I	L	K	V	N	L	G	A	Q	D	G	E	V	K	K	T	F	X	D	I	L	S	A	L	G	Q
Template Known Secondary structure											T	S															T	T															T	T														T	T		T	T	T	T	T	T															S
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		619	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	N	A	R	V	Q	R	E	K	L	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	A	I	A	S	K	Y	R	R	Q	L	Y
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions