Job Description P00887 Confidence 28.28% Date Thu Jan 5 10:56:58 GMT 2012 Rank 81 Aligned Residues 148 % Identity 19% Template c2yxgD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) Resolution 2.20 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	D	S	R	R	R	I	E	K	I	L	N	G	E	D	K	R	L	L	V	I	I	G	P	C	S	I	H	D	L	T	A	A	M	E	Y	A	T	R	L	Q	S	L	R	N	Q	Y	Q	S	R	L	E	I	V	M	R	T	Y	F	E	K	P	R	T	V	V	G	W	K	G	L	I	S	D	P	D	L	N	G
Query Conservation
Alig confidence																														.																		.	.	.	.														.			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.																		.	.	.	.														.			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	E	E	H	K	K	V	I	E	K	V	V	D	V	V	N	G	R	V	Q	V	I	A	G	A	G	S	N	.	C	T	E	E	A	I	E	L	S	V	F	A	E	D	V	G	A	.	.	.	.	D	A	V	L	S	I	T	P	Y	Y	N	K	P	.	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T	S	S									S	.	S															T		.	.	.	.	S									S	S			.			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.																		.	.	.	.														.			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.		110	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	R	V	N	H	G	L	E	L	A	R	K	L	L	L	Q	V	N	E	L	G	V	P	T	A	T	E	F	L	D	M	V	T	G	Q	F	I	A	D	L	I	S	W	G	A	I	G	A	R	T	T	E	S	Q	I	H	R	E	M	A	S	A	L	S	C	P	V	G	F	K	N	G	T	D	G	N	T	R	I
Query Conservation
Alig confidence		.	.	.	.													.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.								.
Template Conservation		.	.	.	.													.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.								.
Template Sequence		.	.	.	.	E	G	L	R	K	H	F	G	K	V	A	E	.	.	.	S	I	N	L	P	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	N	V	P	S	R	T	A	V	N	L	E	P	K	T	V	K	L	L	A	E	E	Y	S	N	I	S	A	V	K	.	E	A	N	P	N	L	S	.
Template Known Secondary structure		.	.	.	.													.	.	.			S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.									S																T	T						.				S				.
Template Predicted Secondary structure		.	.	.	.													.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.								.
Template SS confidence
						112	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130															.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.								.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.
Query Sequence		A	V	D	A	I	R	A	A	R	A	S	H	M	F	L	S	P	D	.	.	.	.	.	.	.	K	N	G	Q	M	T	I	Y	Q	T	S	G	N
Query Conservation																				.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	V	S	E	L	I	H	D	A	K	I	T	V	L	S	G	N	D	E	L	T	L	P	I	I	A	L	G	G	K	G	V	I	S	V	V	A	N
Template Known Secondary structure										T							S	S	G	G	G								T							S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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