Job Description P00887 Confidence 64.67% Date Thu Jan 5 10:56:58 GMT 2012 Rank 37 Aligned Residues 142 % Identity 18% Template c2vqqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:histone deacetylase 4; PDBTitle: structure of hdac4 catalytic domain (a double cysteine-to-2 alanine mutant) bound to a trifluoromethylketone inhbitor Resolution 1.9 Å

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.												.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	L	I	S	D	P	D	L	N	G	S	Y	R	V	N	H	G	L	E	L	A	R	K	L	L	L	Q	V	N	E	L	G	V	.	.	.	.	.	.	.	.	.	.	.	P	T	A	T	E	F	L	D	M	V	T	G	Q	F	I	A	D	L	I	S	W	G	A	I	G	A	R	T	T	E	S	Q	I	H	R
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		T	G	L	V	Y	D	T	L	M	L	K	H	.	.	.	.	Q	H	A	G	R	I	Q	S	I	W	S	R	L	Q	E	T	G	L	R	G	K	C	E	A	I	R	G	R	K	A	T	L	E	E	L	Q	T	V	H	S	E	A	H	T	L	L	Y	G	T	N	P	L	V	D	S	D	T	I	W	N	E	V	H	S
Template Known Secondary structure								G	G	G		S		.	.	.	.																T	S					S														T	T	T	S										S						T	T	S	T
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	A	S	A	L	S	C	P	V	G	F	K	N	G	T	D	G	N	T	R	I	A	V	D	A	I	R	A	A	R	A	S	H	M	F	L	S	P	D	K	N	G	Q	M	T	I	Y	Q	T	S	G	N	P	Y	G	H	I	I	M	R	G	G	K	K	P	N	Y	H	A	D	D	I	A	A	A	C	D	T	L
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.								.					.	.
Template Conservation										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.								.					.	.
Template Sequence		A	G	A	A	R	L	A	V	.	.	.	.	.	.	.	.	.	G	C	V	V	E	L	V	F	K	V	A	T	G	E	L	K	N	G	F	.	.	.	.	.	.	.	.	.	A	V	V	R	P	P	G	.	H	H	A	E	.	.	E	S	T	P	M	G	F	C	Y	F	N	S	V	A	V	A	A	K	L	L	Q
Template Known Secondary structure										.	.	.	.	.	.	.	.	.												T	T	S	S	S				.	.	.	.	.	.	.	.	.				S	S			.	T	T		B	.	.	T	T	B		B	T	T	B	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.								.					.	.
Template SS confidence
		124	.	.	.	.	.	130	.										.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150										.	.	.	.	.	.	.		.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		253	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		H	E	F	D	L	P	E	H	L	V	V	.	.	D	F	S	H	G	N	C
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		Q	R	L	S	V	S	K	I	L	I	V	D	W	D	V	H	H	G	N	G
Template Known Secondary structure							S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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