|   |
47 | . | . | 50 | . | . | . | . | . | . | . | |
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
. | . | . | |
|
. | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
| . | . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
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|
|
| . |
. |
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|
| . |
. |
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|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
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|
Query Sequence |   |
T | T | V | E | S | A | K | S | L | R | D | . |
D | T | W | V | T | L | R | G | N | I | V | E | R | I | . |
. |
S | D | D | . |
. |
L | Y | V | F | K | D | A | S | G | T | I | N | V | D | I | D | H | K | R | W | N | G | V | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
V | T | P | K | D | T | V | E | I | Q | G | E | V | D |
Query Conservation |   |
|
|
|   |   |
|   |   |   |   |
| . |
|   |   |
|   |
|   |
|   |
|
|   |   |   | . | . |   |   |
| . | . |   |
|   |
|   |
|   |
|
|   |
|   |
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|
|   |   |   |
|   |
|   |   | . | . | . | . | . | . | . | . | . |
|   |
|   |   |   |
|
|
|   |
|
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|
|
Alig confidence |   |
|
|
|
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|
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|
|
|
| . |
|
|
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|
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|
|
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|
| . | . |
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|
| . | . |
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|
| . | . | . | . | . | . | . | . | . |
|
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|
Template Conservation |   |
  |   |
|   |
|
|   |   |   |   |   |   |
|   |   |
|   |
|   |
|   |
|   |   |   |
|   |   |
|
|   |
|   |
|   |   |
|
|
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |
|   |
|   |
|   |
Template Sequence |   |
V | K | F | V | D | L | D | E | A | K | D | S | D | K | E | V | L | F | R | A | R | V | H | N | T | R | Q | Q | G | A | T | L | A | F | L | T | L | R | Q | Q | A | S | L | I | Q | G | L | V | K | A | N | K | E | G | T | I | S | K | N | M | V | K | W | A | G | S | L | N | L | E | S | I | V | L | V | R | G | I | V | K |
Template Known Secondary structure |   |
|
| G | G | G |
|
| T | T | T | T | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |
|
| S | S | S | S | S |
|  |  |  |  |  |  |  | T | T |
|
| T | T |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
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|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
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|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
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|
|
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|
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|
|
|
|
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|
|
|
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|
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|
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|
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|
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|
|
  |   |
94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . |
  |
  |   |
113 | . | . | . | . | |
|
|
|
|
|
|
|
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 |
Predicted Secondary structure |   |
|
|
|
|
| . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | D | W | N | S | . |
. |
. |
. |
. |
. |
. |
. |
V | E | I | D | V | K | Q | I | R | K | V | N | P |
Query Conservation |   |
|   |   |   |   | . | . | . | . | . | . | . | . |   |   |
|
|
|   |   |
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |
|   |
|
|
|   |
Template Sequence |   |
K | V | D | E | P | I | K | S | A | T | V | Q | N | L | E | I | H | I | T | K | I | Y | T | I | S | E |
Template Known Secondary structure |   |
 |
| S | S |
|
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
  |