Job Description P76356 Confidence 100.00% Date Thu Jan 5 12:22:18 GMT 2012 Rank 6 Aligned Residues 136 % Identity 25% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.
Predicted Secondary structure																																																																									.								.
Query SS confidence																																																																									.								.
Query Sequence		T	A	T	S	S	E	T	K	I	S	N	E	E	T	L	V	V	T	T	N	R	S	A	S	N	L	W	E	S	P	A	T	I	Q	V	I	D	Q	Q	T	L	Q	N	S	T	N	A	S	I	A	D	N	L	Q	D	I	P	G	V	E	I	T	D	N	S	L	A	G	R	K	Q	.	I	R	I	R	G	E	A	.
Query Conservation																																																																									.								.
Alig confidence																																																																									.								.
Template Conservation
Template Sequence		Q	E	S	A	W	G	P	A	A	T	I	A	A	R	Q	S	A	T	G	T	K	T	D	T	P	I	Q	K	V	P	Q	S	I	S	V	V	T	A	E	E	M	A	L	H	Q	P	K	S	V	K	E	A	L	S	Y	T	P	G	V	S	V	G	T	R	G	A	S	N	T	Y	D	H	L	I	I	R	G	F	A	A
Template Known Secondary structure					T	T	S			S	S	S	S					S	T	T	T	S	S				G	G	G		S	S																S	S					T	T	T		T	T					T	T	T	T			S	S						T	T	B
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
			105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	S	R	V	L	I	L	I	D	G	Q	E	V	T	Y	Q	R	A	G	D	N	Y	G	V	G	L	L	I	D	E	S	A	L	E	R	V	E	V	V	K	G	P	Y	S	V	L	Y	G	S	Q	A	I	G	G	I	V	N	F	I	T	K	K	G
Query Conservation		.
Alig confidence		.															.	.	.	.	.
Template Conservation																	.	.	.	.	.
Template Sequence		E	G	Q	S	Q	N	N	Y	L	N	G	L	K	L	Q	.	.	.	.	.	G	N	F	Y	N	D	A	V	I	D	P	Y	M	L	E	R	A	E	I	M	R	G	P	V	S	V	L	Y	G	K	S	S	P	G	G	L	L	N	M	V	S	K	R	P
Template Known Secondary structure		T	T	S							T	T					.	.	.	.	.		B	T	T	B						G	G	G									S							S	S			T	T
Template Predicted Secondary structure																	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions