Job Description P76206 Confidence 92.71% Date Thu Jan 5 12:20:32 GMT 2012 Rank 15 Aligned Residues 222 % Identity 14% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		G	M	F	A	S	L	N	A	A	A	D	D	S	V	F	T	V	M	D	D	P	A	S	A	K	K	P	F	E	G	N	L	N	A	G	Y	L	A	Q	S	G	N	T	K	S	S	S	L	T	A	D	T	T	M	T	W	Y	G	H	T	T	A	.	.	.	.	W	S	L	W	G	N	A	S	N	T	S	S	N	D
Query Conservation																																																																.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.																	.	.																				.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		G	X	F	V	S	D	Q	A	E	A	K	G	F	I	E	D	.	.	.	.	.	.	.	.	.	S	S	L	D	L	L	L	R	N	Y	Y	F	N	R	D	G	.	.	K	R	V	D	W	T	Q	G	F	L	T	T	Y	E	S	G	F	T	Q	G	T	V	G	F	G	V	D	A	F	G	Y	L	G	L	K	L	D
Template Known Secondary structure				S				T	T	S				S	S	S	B	.	.	.	.	.	.	.	.	.																	.	.																			S	S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.										.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	S	S	E	K	Y	A	A	G	G	R	S	R	F	N	L	T	D	Y	D	Y	L	F	G	Q	A	S	W	L	T	D	R	Y	N	G	Y	R	E	R	D	V	L	T	A	G	Y	G	R	Q	F	L	N	G	P	V	H	S	F	R	F	E	F	G	P	G	V	R	Y	D	K	Y	T	D	N	A	S	E	T	Q
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		G	T	D	Y	S	R	A	G	G	A	V	K	V	R	.	.	I	S	K	T	X	L	K	W	G	E	X	Q	P	T	A	P	V	F	A	A	G	G	S	R	L	F	P	Q	T	A	T	G	F	Q	L	Q	S	S	E	F	E	G	L	D	L	E	A	G	H	F	T	E	E	L	Y	A	T	Y	A	G	E	T	A	K
Template Known Secondary structure																.	.		T	T												S	T	T	B						S	S	S														S	T	T															T	T	T					S
Template Predicted Secondary structure																.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		P	L	G	Y	A	S	G	A	Y	A	W	Q	L	T	D	N	A	K	F	T	Q	G	V	S	V	F	G	A	E	D	T	T	L	N	S	E	S	A	L	N	V	A	I	N	E	H	F	G	L	K	V	A	Y	N	V	T	W	N	S	E	P	P	E	S	A	P	E	H	T	D	R	.	R	T	T	L	S	L	G	Y
Query Conservation																																																																									.
Alig confidence									.	.																																																															.
Template Conservation									.	.
Template Sequence		S	A	D	F	I	G	G	.	.	R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	A	E	L	E	D	I	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	G	K	A	K	A	G	D	I	S	N	T	T	W	S	L	A	A	A	Y
Template Known Secondary structure									.	.				S	S	S	S											T	T	T																T	T																T	T		S	S
Template Predicted Secondary structure									.	.
Template SS confidence
		183	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		251	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		261	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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