Secondary structure and disorder prediction

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Sequence

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Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1sr3 chain A Region: 22 - 38 Aligned: 17 Modelled: 17 Confidence: 14.9% Identity: 41% Fold: OB-fold Superfamily: Heme chaperone CcmE Family: Heme chaperone CcmE Phyre2 PDB 3o0r chain C Region: 1 - 25 Aligned: 25 Modelled: 25 Confidence: 12.8% Identity: 20% PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment Phyre2 PDB 2apl chain A domain 1 Region: 5 - 15 Aligned: 11 Modelled: 11 Confidence: 9.5% Identity: 64% Fold: PG0816-like Superfamily: PG0816-like Family: PG0816-like Phyre2 PDB 3ke2 chain A Region: 3 - 10 Aligned: 8 Modelled: 7 Confidence: 7.7% Identity: 50% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution Phyre2 PDB 1h6g chain A domain 2 Region: 4 - 38 Aligned: 35 Modelled: 35 Confidence: 5.4% Identity: 29% Fold: Four-helical up-and-down bundle Superfamily: alpha-catenin/vinculin-like Family: alpha-catenin/vinculin Phyre2 1 d1sr3a_ 2 c3o0rC_ 3 d2apla1 4 c3ke2A_ 5 d1h6ga2

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1sr3a_ 14.9 41 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 2 c3o0rC_ 12.8 20 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 3 d2apla1 9.5 64 Fold:PG0816-like Superfamily:PG0816-like Family:PG0816-like 4 c3ke2A_ 7.7 50 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution 5 d1h6ga2 5.4 29 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0