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Job DescriptionP07813
Confidence100.00%DateThu Jan 5 11:00:33 GMT 2012
Rank14Aligned Residues407
% Identity32%Templated1ivsa4
SCOP infoAdenine nucleotide alpha hydrolase-like Nucleotidylyl transferase Class I aminoacyl-tRNA synthetases (RS), catalytic domain
Resolution2.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWD
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Template Sequence  LPKAYDPKSVEPKWAEKWAKNPFVA. NPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD
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SS

GGGTSS



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BSSS


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B
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   3......10.........20....... ..30.........40.........50.........60.........70.........80.
 
   81........90... ... ...100.........110.........120.........130.........140....
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Query Sequence  AFGLPAEGAAVKN. . . . NTA. . . . . . . . . . . . PAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELY
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Template Conservation 
 
  
       
         
                       
  
 
  
      
        
      
 
Template Sequence  HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY
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TTTT

GGGSTTTTT



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TTS
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   145....150.........160.........170.........180.........190.........200.........210.........220....
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Query Sequence  KKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWI
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Template Sequence  HEGLAYRAPRLVNWCPRCETTLSDLEV. . ETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGL. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTSS

TTTT

GGGB..

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   162.......170.........180........ .190.........200.........210.........220.
 
   225....230.........240.........250.........260.........270.........280.........290.........300....
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Query Sequence  GRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   305....310.........320.........330.........340.........350.........360.........370.........380....
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Query Sequence  TGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . RRGDIAFVPERWKKVNMDWLE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ..........................T

SSST.................................
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   375....380.........390.....
 
   385....390.........400.........410.........420.........430.........440.........450.........460....
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Query Sequence  GEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGIT
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYL. . . . . . . . . . . .
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SSS




TTT




GGGTT............
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   396...400.........410.........420.........430..
 
   465....470.........480.........490.........500.........510.........520.........530.........540....
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Query Sequence  SPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFF
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Template Sequence  . . . . . EDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDL. . . . . KAFYPGDVLVTGYDILFL. . . . . . WV
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S
TTT

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TS
TTTTTTTTTT
S.....S
SBS
GGGTTT......T
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   433......440.........450.........460.........470...... ...480.........490.... ..
 
   545....550.........560.........570.........580.........590.........600.........610.........620....
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Query Sequence  HKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK
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Template Sequence  SRMEVSGYHFMGERPFKTVLLHGLVLD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EKGQKMSKSK
Template Known Secondary structure  SSS
SBS


...........................................TTSSB
BTTT
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   497..500.........510.........520... ......530...
 
   625....630.........640.........650.........660.........
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Query Sequence  NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRF
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Template Sequence  GNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNF
Template Known Secondary structure  TB





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   534.....540.........550.........560.........570........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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