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Job DescriptionP07813
Confidence100.00%DateThu Jan 5 11:00:33 GMT 2012
Rank12Aligned Residues466
% Identity23%Templatec3kflA_
PDB info PDB header:ligaseChain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: leishmania major methionyl-trna synthetase in complex with2 methionyladenylate and pyrophosphate
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80.........90.........100.........110.
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Query Sequence  KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQ
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Template Sequence  QKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQC
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   208.210.........220.........230.........240.........250.........260.........270.........280.......
 
   112.......120.........130.........140.........150.........160.........170... ......180..
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Query Sequence  LKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVID. . . . . . . . . GCCWRCDTK
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Template Sequence  FQEMNYDMNY. . FIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHV
Template Known Secondary structure  TT


S..TTST
TTTT
GGG
TTS
TTTS
B
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   288.290....... ..300.........310.........320.........330.........340.........350.........360.....
 
   183......190.........200.........210.........220.........230.........240.........250.........260..
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Query Sequence  VERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVA
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Template Sequence  VTWVEEENYMFRLSAFRERLLKYFHDHP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

GGGG
T....................................................
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   366...370.........380.........390...
 
   263......270.........280.........290.........300.........310.........320.........330.........340..
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Query Sequence  AGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   343......350.........360.........370.........380.........390.........400.........410.........420..
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Query Sequence  QRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NCIVPEFRRREVIKTVEK. . . . . . . . . . GLFDLSI
Template Known Secondary structure  .............................................TSS..........




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   394.....400.........410. .......
 
   423.... ..430.........440.........450.........460.........470.........480.........490........
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Query Sequence  SRQRY. . . . WGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSW
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Template Sequence  SRKRESVMNWSIPVPGDER. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HCIYVWLDALF
Template Known Secondary structure  GGGGTT
S
TT..................................................
T
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   419420.........430....... ..440........
 
   499500.. .......510.........520.........530.........540.........550.........560.........570....
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Query Sequence  YYAR. . . . YTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAF
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Template Sequence  NYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIY. . WPAFLMS. . . . . AELPLPERLVSHGWWTK. . .
Template Known Secondary structure 
TTS

SSSTTTT

S
SGGGT.......TT



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   449450.........460.........470.........480.........490.... .....500. ........510........
 
   575....580.........590.........600.........610.........620.........630.........640.........650....
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Query Sequence  YYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADM
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQD
Template Known Secondary structure  .........................................TT

TTTT






SS
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   519520.........530.........540.........550.......
 
   655....660........ .670.........680... ......690.........700.........710.........720.........
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Query Sequence  TLEWQESGVEGANR. . FLKRVWKLVYEHTAK. . . GDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAI
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Template Conservation     
                  
   
                     
  
   
      
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Template Sequence  DGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDI. QHALIAI
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TTTTT
TTTSTTSB







TT
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   558.560.........570.........580.........590.........600.........610.........620......... 630......
 
   730.........740....... ..750.........760.........770....... ..780........
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Query Sequence  MELMNKLAKAPTDGEQDR. . . . . . . . . . . . . ALMQEALLAVVRMLNPFTPHICFTLWQELK. . GEGDIDNAPWP
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Template Sequence  FDVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMENYL
Template Known Secondary structure 
TTT
TTTST

GGGSSSGGGSS
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   637..640.........650.........660.........670.........680.........690.........700.........710
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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