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Job DescriptionP07813
Confidence100.00%DateThu Jan 5 11:00:33 GMT 2012
Rank8Aligned Residues513
% Identity24%Templatec1rqgA_
PDB info PDB header:ligaseChain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: methionyl-trna synthetase from pyrococcus abyssi
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50......... 60.........70.........80.........90.........100.........110.
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Query Sequence  EKYYCLSMLPYPSGRLHMGHVRNYTIG. DVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQ
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Template Conservation   
  
    

 

 




     
  
  

  
  
  
    
 
  
 


  
   
                 
Template Sequence  VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT
Template Known Secondary structure 



BTTS

BTTT
B

ST

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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   112.......120.........130.........140.........150.........160.........170..
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Query Sequence  LKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVI. . . . . . . . . . . . . . . . . . .
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Template Sequence  FQRAKISFDF. . FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVC
Template Known Secondary structure  T


S..TTSTT
BTTTTB


GGG

SB
SSS

S


TTT
SSS
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   82.......90. ........100.........110.........120.........130.........140.........150.........
 
   173......180.........190.........200.........210.........220.........230.........240..
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Query Sequence  . . . . . . . . . . DGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNT
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Template Sequence  GRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 




TTSSBS
B
TTT

B

GGGT...................................
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   160.........170.........180.........190.........200....
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  LTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWA
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   323......330.........340.........350.........360.........370.........380.........390.........400..
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Query Sequence  ANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADK
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Template Conservation  .................................................................     
         
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KQPWKPNVKNMVLSW
Template Known Secondary structure  .................................................................SS


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   205....210.........
 
   403......410.........420.........430.........440.........450.........460.........470.........480..
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Query Sequence  LTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMP
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Template Sequence  IEE. . . . . . . . . . GLEERAITRDLNWGIPVPLDEEDMKGK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT..........






SSS
B
S


SSSTT
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   220.. .......230.........240.........
 
   483......490.........500.........510.........520. ........530.........540.........550.......
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Query Sequence  ALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYW. . . . . LPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSD
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Template Sequence  . . . . . . VLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIF. . WPAFLMAYGKYKDEE
Template Known Secondary structure  ......
GGGTT
TTTTB
SS

GGGT..TT

B
SSS
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   250.........260.........270.........280.........290.........300...... ...310.........320.
 
   558.560 .........570.........580.........590.........600.........610.........620.........630..
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Query Sequence  EPA. . . . . KQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQV
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Template Sequence  VEAEWNLPYDIPANEYLTL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EGKKFSTSRNWAIWVHE
Template Known Secondary structure 

B
B


SB



............................................TT
BTTTTBS
B
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   322.......330.........340 .........350.......
 
   633......640.........650.........660........ .670......... 680.........690.........700......
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Query Sequence  MVERYGADTVRLFMMFASPADMTLEWQESGVEGANR. . FLKRVWKLVYE. . . . HTAKGDVAALNVDALTENQKALRRDVH
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Template Sequence  FLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIE
Template Known Secondary structure  TTTS
T

SSS

TTTTTSTTB







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   358.360.........370.........380.........390.........400.........410.........420.........430.......
 
   707..710.........720.........730.........740....... ..750.........760.........770...
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Query Sequence  KTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPTDGEQDR. . . . . . . . . . . . . ALMQEALLAVVRMLNPFTPHICFTLW
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Template Conservation       
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Template Sequence  KAFKEVGELIMNYRF. KDALKRVMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIW
Template Known Secondary structure  TT
.TT
TTT
TTT
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   438.440.........450.. .......460.........470.........480.........490.........500.........510......
 
   774.....780.........790. ........800.........810.........820.........830
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Query Sequence  QELKGEGDIDNAPWPVAD. . . . . . . . . . . . . . EKAMVEDSTLVVVQVNGKVRAKITVPVDATEEQVRERAG
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Template Conservation    
                  
     
   
    
                             
    
Template Sequence  HLLNLDEVKRWEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAK
Template Known Secondary structure  TT

S


SS




TT
B





S




TTTTT
S
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   517..520.........530.........540.........550.........560.........570.........580.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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