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Job DescriptionP07813
Confidence100.00%DateThu Jan 5 11:00:33 GMT 2012
Rank1Aligned Residues714
% Identity22%Templatec1qu2A_
PDB info PDB header:ligase/rnaChain: A: PDB Molecule:isoleucyl-trna synthetase; PDBTitle: insights into editing from an ile-trna synthetase structure2 with trna(ile) and mupirocin
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  QEQYRPEEIESKVQLHWDEKRTFEV. . TEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGW
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Template Sequence  PMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGW
Template Known Secondary structure 
SS

TTTTTS
B





BSSS


TTT
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   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   80.........90....... ..100.........110.........120.........130.........140.......
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Query Sequence  DAFGLPAEGAAVKNNTAP. . . . . . . . . . . . APWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKG
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Template Sequence  DTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKG
Template Known Secondary structure  B

ST

STTT
TTT

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TTS
TTSTT
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   95....100.........110.........120.........130.........140.........150.........160.........170....
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  LVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRS
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Template Sequence  LIYKGKKPVYWSPSSESSLAEAEIEY. . . . . . . . . . HDKRSASIYVAFNVKDDKGVVDA. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
TTTT

GGG..........

B


SSTTGGGT.....................
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   175....180.........190.........200 .........210.........220...
 
   228.230.........240.........250.........260.........270.........280.........290.. .......300..
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Query Sequence  EGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAE. . . . . AEMATMEKKG
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Template Sequence  . . . . . . . . . . . . DAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGK
Template Known Secondary structure  ............T

B

S
GGGSS

B




TT






TTTT




TTTT

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   224.....230.........240.........250.........260.........270.........280.........290.
 
   303......310.........320.........330.........340.........350.........360...... ..
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Query Sequence  VDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGS. . . . . . . . . . . . . . EP
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Template Sequence  ELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKAN
Template Known Secondary structure  T
TT


B

TT

SB





SS

SSS
S


B
TTS
STTTSSS







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TT
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SS
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   292.......300.........310.........320.........330.........340.........350.........360.........370.
 
   369370.........380......... 390.........400.........410..... ....420
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Query Sequence  DLSQQALTEKGVLFNSGEFNG. . . . . . . . . . . . . . LDHEAAFNAIADKLTAMGVGERKVNY. . . . . . . . . . . . . . RLRDW
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Template Sequence  KAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEW
Template Known Secondary structure  TTGGGSS



TTT

B

TSSS


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   372.......380.........390.........400.........410.........420.........430.........440.........450.
 
   421........430.........440........ .450.........460.........470.........480.........490.....
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Query Sequence  GVSRQRYWGAPIPMVTLEDGTVMPTPDD. . . . . QLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFME
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Template Sequence  VISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDL. LPEGFTHPGSPNGTFTKETDIMDVWFD
Template Known Secondary structure 
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SSS
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TTS



TS
.SSTT


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   452.......460.........470.........480.........490.........500... ......510.........520.........530
 
   496...500.........510.........520.........530.........540.........550.........560.........570.....
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Query Sequence  SSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFY
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Template Sequence  SGSSHRGVLETRP. . . . . . . . . . ELSFPADMYLEGSDQYRG. . . . . . WFNSSITTSVATRGVSPYKFLLSHGFVMDG. . .
Template Known Secondary structure  TTTTTST..........T

SSBSGGGGTT......SS
SBS


T...
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   531........540... ......550.........560. ........570.........580.........590.
 
   576...580.........590.........600.........610.........620.........630.........640.........650.....
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Query Sequence  YVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMT
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EGKKMSKSLGNVIVPDQVVKQKGADIARLWVS. STDYLAD
Template Known Secondary structure  ........................................TS



SSSS



T
.TS
TTS
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   592.......600.........610.........620... ......630
 
   656...660.........670.........680...... ...690.........700.........710.........720.........730
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Query Sequence  LEWQESGVEGANRFLKRVWKLVYEHTAKGDV. . . . . AALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIM
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Template Sequence  VRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQN
Template Known Secondary structure 

TSTT




GGGS
TT
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   631........640.........650.........660.........670.........680.........690.........700.........710
 
   731........740....... ..750.........760.........770....... ..780........ .790
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Query Sequence  ELMNKLAKAPTDGEQDR. . . . . . . . . . . . . . . ALMQEALLAVVRMLNPFTPHICFTLWQELK. . GEGDIDNAPWP. . . VA
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Template Sequence  FINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEV
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TTS
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   711........720.........730.........740.........750.........760.........770.........780.........790
 
   791...... ..800.........810.........
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Query Sequence  DEKAMVE. . . . . DSTLVVVQVNGKVRAKITVPVD
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Template Sequence  DQALLDKWRTFMNLRDDVNRALETARNEKVIGKS
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SSG
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   791........800.........810.........820....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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