Return to main results Retrieve Phyre Job Id

Job DescriptionP07813
Confidence100.00%DateThu Jan 5 11:00:33 GMT 2012
Rank4Aligned Residues712
% Identity24%Templatec1ileA_
PDB info PDB header:aminoacyl-trna synthetaseChain: A: PDB Molecule:isoleucyl-trna synthetase; PDBTitle: isoleucyl-trna synthetase
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20..... ....30.........40.........50.........60.........70.........80
Predicted Secondary structure 








..



























Query SS confidence 






















. .






















































Query Sequence  EQYRPEEIESKVQLHWDEKRTFE. . VTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWD
Query Conservation    
    

 
    
     
 ..        

 
   


 

 




       

  

 

 
  

   
 
Alig confidence 






















..






















































Template Conservation         

 
    
     
           

 
   


 

 




       

 


 

 
  

   
 
Template Sequence  GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD
Template Known Secondary structure 



TTTTTS
B

B





TTS


TTTT
B



Template Predicted Secondary structure 








































Template SS confidence 















































































   6...10.........20.........30.........40.........50.........60.........70.........80.....
 
   81........90... ......100.........110.........120.........130.........140...
Predicted Secondary structure 



.................












Query SS confidence 












. . . . . . . . . . . . . . . . .

















































Query Sequence  AFGLPAEGAAVKN. . . . . . . . . . . . . . . . . NTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTEL
Query Conservation   





  
 
 .................               
     

   

   
 
 
  
   
   
  
Alig confidence 












.................

















































Template Conservation    




  
 
                                        
   

     
 

         
  
Template Sequence  THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL
Template Known Secondary structure 

TT

S
TTTTTTTT


TTS
Template Predicted Secondary structure 

























Template SS confidence 















































































   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   144.....150.........160.........170.........180.........190.........200.........210.........220...
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  YKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNW
Query Conservation    




 
   
 
 
   
 


 

  
                           
                   
 
Alig confidence 








































.......................................
Template Conservation     



     
 


   
 

  

             .......................................
Template Sequence  FDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


TTTT

T.......................................
Template Predicted Secondary structure 
























.......................................
Template SS confidence 















































































   166...170.........180.........190.........200......
 
   224.....230........ .240.........250.........260.........270.........280.........290.......
Predicted Secondary structure 








......


























Query SS confidence 














. . . . . .


























































Query Sequence  IGRSEGVEITFNVND. . . . . . YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMAT
Query Conservation                 ......    
 
 

 



     
 
 
   
                              
Alig confidence  ........






......











































.













Template Conservation  ........  
 
            
   

 
 

 
     
 
   
               .              
Template Sequence  . . . . . . . . VRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEG. LGRKLLGEGTQVLK
Template Known Secondary structure  ........BSSGGGGT
SSS
GGGGGG



TTS
TTTT.T
TTS
Template Predicted Secondary structure  ........























.




Template SS confidence 















































































   207..210.........220.........230.........240.........250.........260... ......270.......
 
   298.300.........310.... .....320.........330.........340.........350.........360.......
Predicted Secondary structure 













...
































.......
Query SS confidence 
















. . .




















































. . . . . . .
Query Sequence  MEKKGVDTGFKAVHPLT. . . GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSE. . . . . . .
Query Conservation          
     
  ...   



    
    




   



  

       
     
       .......
Alig confidence 
















...




















































.......
Template Conservation     
  
       
          
     
    


 
   


   
        
     

  
        
 
Template Sequence  TFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGL
Template Known Secondary structure 
TT
BB

SS



SS
SB
TT

SSSS
S


TTS
TT





B
TTSBB
SGGGTT
Template Predicted Secondary structure 





















































Template SS confidence 















































































   278.280.........290.........300.........310.........320.........330.........340.........350.......
 
   368.370.........380......... 390.........400.........410.....
Predicted Secondary structure  .....









..............




.............
Query SS confidence  . . . . .





















. . . . . . . . . . . . . .

























. . . . . . . . . . . . .
Query Sequence  . . . . . PDLSQQALTEKGVLFNSGEFNG. . . . . . . . . . . . . . LDHEAAFNAIADKLTAMGVGERKVNY. . . . . . . . . . . . .
Query Conservation  .....       
   
 
        ..............         
   
         
  .............
Alig confidence  .....





















..............

























.............
Template Conservation     

   
   
   
 
              
    
      



                   
           
Template Sequence  YFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEW
Template Known Secondary structure  BTT
B
SSS

B



GGGGSSSGGGTTTTT
Template Predicted Secondary structure 

























Template SS confidence 















































































   358.360.........370.........380.........390.........400.........410.........420.........430.......
 
   416...420.........430.........440.........450.........460.........470........ .480.........490..
Predicted Secondary structure  ..









































.








Query SS confidence  . .






























































.













Query Sequence  . . RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTV. NGMPALRETDTFDT
Query Conservation  ..   

 




 

 



               
                            .      
  



 
Alig confidence  ..






























































.













Template Conservation 
  
 

 




 

 


                                                    
  



 
Template Sequence  LKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDV
Template Known Secondary structure  T




B

SSS
B

SSSS



SBSS


SS


STT

TTSS
S
B

Template Predicted Secondary structure 

























































Template SS confidence 















































































   438.440.........450.........460.........470.........480.........490.........500.........510.......
 
   493.... ..500.........510.........520.........530.........540.........550.........560.........570.
Predicted Secondary structure 



.

































Query SS confidence 




.









































































Query Sequence  FMESS. WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLA
Query Conservation 



 .                         
 
   

 

              
          


 
   
 

 
Alig confidence 




.















.....

















......




























Template Conservation 



                  .....    
 
    
 
    ......
               
   
  

 

 
Template Sequence  WYDSGAMPFASLHYPFEHEEVF. . . . . RESFPADFIAEGIDQTRG. . . . . . WFNSLHQLGVMLFGSIAFKNVICHGLILD
Template Known Secondary structure  TTTTTTS
.....SSBSBGGGGGT......SS
SBS


Template Predicted Secondary structure 










.....





......





Template SS confidence 















































































   518.520.........530......... 540.........550....... ..560.........570.........580......
 
   572.......580.........590.........600.........610.........620.........630.........640.........650.
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  DAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASP
Query Conservation                  
                            
 




 



 
   
  







 
     
Alig confidence 
...........................................



































Template Conservation   ........................................... 
 




 

 
 
   
  



 

  
     
Template Sequence  E. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAP
Template Known Secondary structure  T...........................................TSS


TTTT



TTT
S
Template Predicted Secondary structure 
...........................................

















Template SS confidence 















































































   587 ..590.........600.........610.........620...
 
   652.......660........ .670.........680..... ....690.........700.........710.........720....
Predicted Secondary structure 







.

......









Query SS confidence 
















.
















. . . . . .






































Query Sequence  ADMTLEWQESGVEGANR. FLKRVWKLVYEHTAKGD. . . . . . VAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNT
Query Conservation     
  

   
     . 
 

 
          ......            
  

  
   
               
Alig confidence 
















.
















......






































Template Conservation     
  
    
         

 
                            
  

  
      
    
      
Template Sequence  PEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTS
Template Known Secondary structure  SSS


T


TTS


STTS
TT
Template Predicted Secondary structure 





















Template SS confidence 















































































   624.....630.........640.........650.........660.........670.........680.........690.........700...
 
   725....730.........740....... ..750.........760.........770........ .780....
Predicted Secondary structure 


..............





......


Query SS confidence 






















. . . . . . . . . . . . . .






























. . . . . .





Query Sequence  AIAAIMELMNKLAKAPTDGEQDR. . . . . . . . . . . . . . ALMQEALLAVVRMLNPFTPHICFTLWQELKG. . . . . . EGDIDN
Query Conservation 
          
           ..............  
   
  
  




 
  




  
  ......  

  
Alig confidence 






















..............






























......





Template Conservation     
  
      
 

   
                  
   
  
  

 
  
  




  
          

  
Template Sequence  ARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHL
Template Known Secondary structure  SSTTTT
TTTSSTTTTTSTTTTTTSTTS
SSGGG
Template Predicted Secondary structure 


















Template SS confidence 















































































   704.....710.........720.........730.........740.........750.........760.........770.........780...
 
   785....790....... ..800.........810......
Predicted Secondary structure 






......
Query SS confidence 












. . . . . .


















Query Sequence  APWPVADEKAMVE. . . . . . DSTLVVVQVNGKVRAKITV
Query Conservation    

  

     ......        
  
 
     
Alig confidence 












......


















Template Conservation    

                    
   

       
Template Sequence  ADWPEADPALADEALVAQMRAVLKVVDLARAARAKSGV
Template Known Secondary structure  S





TTT

TT
TTS


Template Predicted Secondary structure 











Template SS confidence 





































   784.....790.........800.........810.........820.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions