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Job DescriptionP31677
Confidence100.00%DateThu Jan 5 11:48:33 GMT 2012
Rank13Aligned Residues363
% Identity17%Templatec3okaA_
PDB info PDB header:transferaseChain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS
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Template Sequence  RKTLVVTNDFPPR. . . . . . IGGIQSYLRDFIATQDPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSVMLPTP. . . . . .
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S

TTS......
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S
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   5....10....... ..20.........30.........40.........50.........60.........70..
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  NAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTP
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . TTAHAMAEIIRER. . EIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVG.
Template Known Secondary structure  ..........................T..T
SSS
TTGGGGTT
S

S
SSS.
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   73......80..... ....90.........100.........110.........120...
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  EIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPL
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Template Sequence  . WSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFK. . . . . . . . . . . . . . . . . SAFGSHPTFEHLPSGVDVKRFTP. ATPED
Template Known Secondary structure  .TT

TT
SS
T.................TTT
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B
TTTS

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   124.....130.........140.........150...... ...160.........170......... 180....
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  PPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRI
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Template Sequence  KSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQ. . . . LLIVGSGR. . . . . . . . . . . . . . . . . . YES
Template Known Secondary structure  T

TT

S
SSGGG

TT
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T..................T
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   185....190.........200.........210.........220.........230. ........ 240..
 
   322.......330.........340.........350........ .360.........370.........380.........390....
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Query Sequence  NGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVT. . . . . . . PLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANE
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Template Sequence  TLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVP. . . . . VIAGTSGGAPET
Template Known Secondary structure  TGGGGGGS


S



BGGGTB


S
TT

.....SSTTGGGG
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   243......250.........260.........270.........280.........290.........300..... ....310.......
 
   395.. ..400.........410.........420.........430....... ..440.........450..
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Query Sequence  LTS. . ALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK. NDINHWQECFISDLK
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Template Sequence  VTPATGLVVEGSDVDKLSELLIELLD. DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQ
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TTT
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   318.320.........330.........340... ......350.........360.........370.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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