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Job DescriptionP31677
Confidence100.00%DateThu Jan 5 11:48:33 GMT 2012
Rank5Aligned Residues434
% Identity13%Templatec3nb0A_
PDB info PDB header:transferaseChain: A: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.... ...10.........20.........30 ....... ..40.........50.. .
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Query Sequence  SRLVV. VSNRIAPPDEHAASAGGLAVGILG. . . . ALKAAGG. LWFGWSGETGNEDQP. . . . . . . . . . . . . . . . . . . . . . L
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Template Sequence  NHLLFETA. . . . . . TEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHAL
Template Known Secondary structure  ......TTTTS
SSGGG

TTT

SSSGGGS
STT
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   7..10.... .....20.........30.........40.........50.........60.........70.........80
 
   54.....60..... ....70.........80.........90.........100.........110.........120 ..
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Query Sequence  KKVKKGNITWAS. . . . . . . . . . FNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPL. LQ
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Template Sequence  QTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQ
Template Known Secondary structure  TTT

SSTT


SGGGGGG




SS


S
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   123......130.........140.........150.........160........ .170.....
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Query Sequence  DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALP. . . . . . . . . . . . . . . . . . . . . . . . . . . TYDTLLE
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Template Sequence  HAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHA. . . . TLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERA
Template Known Secondary structure  SGGG
TTT
S
SS....
TSSS
S
GGG

TT
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   161........170.........180.........190.... .....200.........210.........220.........230......
 
   176...180.........190.........200.........210.........220.........230.........240.........250..
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Query Sequence  QLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAEL. . .
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Template Sequence  AAHSADVFTTVSQITAFEAEH. . . . . . . . . . . . . . . . . . LLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVR
Template Known Secondary structure  SSSS..................TSS

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B




SSTT
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   237..240.........250....... ..260.........270.........280.........290........
 
   253......260..... ....270.........280....... ..290.........300.........310.......
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Query Sequence  . . . . . . . . . . . KNVQNIFSVERLD. YSKGLPERFLAYEALLEKYPQH. . . HGKIRYTQIAPTSRGDVQAYQDIRHQLENE
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Template Sequence  GHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRAL
Template Known Secondary structure  TTT


S
GGGSS

TTTTTTT







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   299300.........310.........320.........330.........340.........350.........360.........370........
 
   318.320.........330
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Query Sequence  AGRINGKYGQLGW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNK
Template Known Secondary structure  TTSTT

SSS







TT



SBSTTGGG
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   379380.........390.........400.........410.........420.........430.........440.........450........
 
   331........340.........350.........360.........370.........380.........390.
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Query Sequence  . . . . . . . . . . . . . . . . . . . TPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGA
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Template Sequence  IRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVP. . . . . SITTNVSGF
Template Known Secondary structure  T



TT
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TT
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SSBSS
TT

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   459460.........470.........480.........490.........500.........510.........520.... .....530...
 
   392..... ..400..... ....410.........420.........430.........440.........450....
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Query Sequence  ANELTS. . . . . . . . . . ALIVNPYD. . . . . . . RDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI
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Template Conservation   
 
            
  
  
           

  
              
           
      
   
  
Template Sequence  GSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLA
Template Known Secondary structure  TTS
TT

SSS
T

GGGGGB
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   534.....540.........550.........560.........570.........580.........590.........600.........610...
 
   455....460........
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Query Sequence  VPRSAESQQRDKVA
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Template Conservation 
 
           
Template Sequence  LRRGYPDQFRELVG
Template Known Secondary structure 
TTS
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   614.....620.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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