Job Description P31677 Confidence 99.95% Date Thu Jan 5 11:48:33 GMT 2012 Rank 25 Aligned Residues 265 % Identity 12% Template c2xcuC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Resolution 2.42 Å

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	D	K	L	L	P	L	L	Q	D	D	D	I	I	W	I	H	D	Y	H	L	L	P	F	A	H	E	L	R	K	R	G	V	N	N	R	I	G	F	F	L	H	I	P	F	P	T	P	E	I	F	N	A	L	P	T	Y	D	T	L	L	E	Q	L	C	D	Y	D	L	L	G	F	Q	T	E	N	D	R
Query Conservation
Alig confidence														.												.	.									.	.																						.	.	.	.	.	.	.	.	.	.
Template Conservation														.												.	.									.	.																						.	.	.	.	.	.	.	.	.	.
Template Sequence		F	S	V	K	R	F	E	E	L	S	K	P	.	K	A	L	I	V	V	E	R	E	F	W	.	.	P	S	L	I	I	F	T	K	.	.	V	P	K	I	L	V	N	A	Y	A	K	G	S	L	I	E	K	I	L	S	K	.	.	.	.	.	.	.	.	.	.	K	F	D	L	I	I	M	R	T	Q	E	D	V
Template Known Secondary structure														.	S						S					.	.									.	.	S																			G	G	.	.	.	.	.	.	.	.	.	.	G		S					S	S
Template Predicted Secondary structure														.												.	.									.	.																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.											.	.	.	.	.	.	.	.	140	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	F	L	D	C	L	S	N	L	T	R	V	T	T	R	S	A	K	S	H	T	A	W	G	K	A	F	R	T	E	V	Y	P	I	G	I	E	P	K	E	I	A	K	Q	A	A	G	P	L	P	P	K	L	A	Q	L	K	A	E	L	K	N	V	Q	N	I	F	S	V	E	R	L	D	Y	S	K	G	L	P
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	F	K	T	F	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	F	S	C	G	N	L	K	F	I	C	Q	K	G	K	G	I	K	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	I	V	A	G	S	I	H	T	G	E	V	E
Template Known Secondary structure						T	T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							G	G	G											S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										G	G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.																				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		E	R	F	L	A	Y	E	A	L	L	E	K	Y	P	Q	H	H	G	K	I	R	Y	T	Q	I	A	P	T	S	R	G	D	V	Q	A	Y	Q	D	I	R	H	Q	L	E	N	E	A	G	R	I	N	G	K	Y	.	G	Q	L	G	W	T	P	L	Y	Y	L	N	Q	H	F	D	R	K	L	L	M	K	I	F	R
Query Conservation																																																								.
Alig confidence																			.	.	.	.									.	.	.	.	.	.	.	.																		.																.	.
Template Conservation																			.	.	.	.									.	.	.	.	.	.	.	.																																		.	.
Template Sequence		I	I	L	K	A	F	K	E	I	K	K	T	Y	S	S	L	K	.	.	.	.	L	I	L	V	P	R	H	I	.	.	.	.	.	.	.	.	E	N	A	K	I	F	E	K	K	A	R	D	F	G	F	K	T	S	F	F	E	N	L	E	G	D	V	I	L	V	D	R	F	.	.	G	I	L	K	E	L	Y	P
Template Known Secondary structure												T	T		T	T			.	.	.	.						S	S	G	.	.	.	.	.	.	.	.	G	G											T	T						T	T				S	S							T	.	.	T						G	G
Template Predicted Secondary structure																			.	.	.	.									.	.	.	.	.	.	.	.																																		.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.	.	.									.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.
		351	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.						.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure						.																																										.	.	.	.	.
Query SS confidence						.																																										.	.	.	.	.
Query Sequence		Y	S	D	V	.	G	L	V	T	P	L	R	D	G	M	N	L	V	A	K	E	Y	V	A	A	Q	D	P	A	N	P	G	V	L	V	L	S	Q	F	A	G	A	A	N	E	L	.	.	.	.	.	T	S	A	L	I	V	N	P	Y	D	R	D	E	V	A	A	A	L	D	R	A	L	T	M	S	L	A	E	R
Query Conservation						.																																										.	.	.	.	.
Alig confidence						.																								.	.	.	.	.														.	.	.	.	.																											.	.
Template Conservation																														.	.	.	.	.																																													.	.
Template Sequence		V	G	K	I	A	I	V	G	G	T	F	V	N	I	G	G	H	N	L	L	E	P	T	C	W	G	I	P	.	.	.	.	.	V	I	Y	G	P	Y	T	H	K	V	N	D	L	K	E	F	L	E	K	E	G	A	G	F	E	V	K	N	E	T	E	L	V	T	K	L	T	E	L	L	S	V	K	K	.	.	E
Template Known Secondary structure		G								S	S	S	S	T	T											T	T			.	.	.	.	.					S			T	T	S										T	T							S														S			.	.
Template Predicted Secondary structure																														.	.	.	.	.																																													.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.						.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.			.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	R	H	A	E	M	L	D	V	I	V	K	N	D	I	N	H	W	Q	E	C	F	I	S
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		I	K	V	E	E	K	S	R	E	I	K	G	C	Y	.	.	L	E	K	L	R	E	F	L	R
Template Known Secondary structure																.	.
Template Predicted Secondary structure																.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions