 |
Job Description | P31677 | Confidence | 31.19% | Date | Thu Jan 5 11:48:33 GMT 2012 |
Rank | 72 | Aligned Residues | 93 |
% Identity | 19% | Template | c1wwkA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:phosphoglycerate dehydrogenase; |
PDBTitle: crystal structure of phosphoglycerate dehydrogenase from pyrococcus2 horikoshii ot3
|
Resolution | 1.90 Å |
|
 |
  |   |
292 | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 350 | . | . | . | . | . | . | . | |
|
. | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|  |  |  |  | . | . |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
Query Sequence |   |
R | Y | T | Q | I | A | P | T | S | R | G | D | V | Q | A | Y | Q | D | I | R | H | Q | L | E | N | E | A | G | R | I | N | G | K | Y | G | Q | L | G | W | T | P | L | Y | Y | L | N | Q | H | F | D | R | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | L | M | K | I | F | R | Y | S | D | V | G | L | V | . |
. |
T | P |
Query Conservation |   |
  |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |   |   |   |
|
|
|   |
|   | . | . |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
Template Conservation |   |
  |
|
|
|
|
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |
|
|   |   |
|   |   |
|
|   | . |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |
|
|
|
|   |   |   |
|
|
|
Template Sequence |   |
T | I | G | I | I | G | F | G | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | G | Y | Q | V | A | K | I | A | N | A | L | G | M | . |
N | I | L | L | Y | D | P | Y | P | N | E | E | R | A | K | E | V | N | G | K | F | V | D | L | E | T | L | L | K | E | S | D | V | V | T | I | H | V | P | L |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . |  |  |  |  |  |
| S | S |
|
|  |  |  |  |  |  | T | T |
|  |  |
|
|  |  |  |  |  |  |  |
| S |  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
141 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
. | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |
  |
  |   |
360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | R | D | G | M | N | L | V | A | K | E | Y | V | A | A | Q | D | P | A | N | P | G | V | L | V | L | S | Q | F | A | G | A | A | N | E | L | T | S | A | L | I | V | N | P | Y | D | R | D | E | V | A | A | A | L | D | R |
Query Conservation |   |
  |   |
|   |   |
|
|   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |
|
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|
|   | . | . | . |
|
|   |
|
| . | . |
|   |   |
|
|   |   |
| . | . | . | . | . | . | . | . | . |
|   |   |
|
|   |   |
|
|   |   |
Template Sequence |   |
V | E | S | T | Y | H | L | I | N | E | E | R | L | K | L | M | K | K | . |
. |
. |
T | A | I | L | I | . |
. |
N | T | S | R | G | P | V | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
D | T | N | A | L | V | K | A | L | K | E |
Template Known Secondary structure |   |
S | T | T | T | T | T |
| B |
|  |  |  |  |  |  | S |
| T | . | . | . | T |
|  |  |  | . | . |  |
| S |
| G | G | G | B | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . |
|  |  |  |  | . | . |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
204 | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | |
|
|
. | . | . | . | . | |
|
. | . | . | 230 | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | 240 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|