Return to main results Retrieve Phyre Job Id

Job DescriptionP24252
Confidence11.36%DateThu Jan 5 11:41:38 GMT 2012
Rank17Aligned Residues50
% Identity6%Templated1sd4a_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Penicillinase repressor
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   73......80.........90.........100.........110.........120....
Predicted Secondary structure 








Query SS confidence 



















































Query Sequence  NQYRQRVVVLLSHPANPRDHTNVLMHVQGYFRPHIDSTERQQLAALIDSYRR
Query Conservation    
   
  

    
     


 

 



  

  

  
  

  

 
Alig confidence 




























..




















Template Conservation             
     

    
     ..   

  

  
  

     
Template Sequence  DDIKXKTAKTFLNKLYGGDXKSLVLNFAK. . NEELNNKEIEELRDILNDISK
Template Known Secondary structure  TT
..TT
S


Template Predicted Secondary structure 


..





Template SS confidence 



















































   76...80.........90.........100.... .....110.........120.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions