Job Description P24252 Confidence 17.83% Date Thu Jan 5 11:41:38 GMT 2012 Rank 7 Aligned Residues 77 % Identity 8% Template c2oxoA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase Resolution 2.00 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																						.																										.	.	.	.	.
Query SS confidence																																						.																										.	.	.	.	.
Query Sequence		L	D	D	Y	Y	N	Q	Y	R	Q	R	V	V	V	L	L	S	H	P	A	N	P	R	D	H	T	N	V	L	M	H	V	Q	G	Y	F	.	R	P	H	I	D	S	T	E	R	Q	Q	L	A	A	L	I	D	S	Y	R	R	G	E	Q	P	.	.	.	.	.	L	L	A	P	L	M	R	I	K	H	Y	M	A
Query Conservation																																						.																										.	.	.	.	.
Alig confidence																																						.																										.	.	.	.	.
Template Conservation
Template Sequence		L	H	S	W	L	D	R	Y	E	K	I	L	A	S	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	A	I	R	R	G	L	P	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	K	A	A	S	A	K	L	I	R	S	T	L	S	D	A	F	R	E	A	I
Template Known Secondary structure																																					S		S		B	G	G	G																T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		142	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	G
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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