Job Description P24252 Confidence 6.35% Date Thu Jan 5 11:41:38 GMT 2012 Rank 75 Aligned Residues 82 % Identity 9% Template c2kj8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:putative prophage cps-53 integrase; PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2 Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.
Predicted Secondary structure																																					.								.																										.	.	.	.	.
Query SS confidence																																					.								.																										.	.	.	.	.
Query Sequence		I	H	Q	W	Q	N	L	D	D	Y	Y	N	Q	Y	R	Q	R	V	V	V	L	L	S	H	P	A	N	P	R	D	H	T	N	V	L	.	M	H	V	Q	G	Y	F	.	R	P	H	I	D	S	T	E	R	Q	Q	L	A	A	L	I	D	S	Y	R	R	G	E	Q	P	.	.	.	.	.	L	L	A	P	L	M
Query Conservation																																					.								.																										.	.	.	.	.
Alig confidence																			.																		.								.																										.	.	.	.	.
Template Conservation																			.
Template Sequence		S	S	N	N	N	S	F	S	A	I	Y	K	E	W	Y	E	H	.	K	K	Q	V	W	S	V	G	Y	A	T	E	L	A	K	M	F	D	D	D	I	L	P	I	I	G	G	L	E	I	Q	D	I	E	P	M	Q	L	L	E	V	I	R	R	F	E	D	R	G	A	M	E	R	A	N	K	A	R	R	R	C	G
Template Known Secondary structure				S	T	T	B												.		T	T	T	S																					T	T	S	B	T	T	S															T	T	T
Template Predicted Secondary structure																			.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	K	H	Y	M	A	L	Y	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	F	R	Y	A	I	V	T	G
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions