Job Description P36767 Confidence 6.61% Date Thu Jan 5 11:53:50 GMT 2012 Rank 59 Aligned Residues 85 % Identity 15% Template c3p8bB_ PDB info PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Resolution 1.80 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		D	E	V	L	H	S	L	L	P	R	A	F	S	R	F	S	Q	T	M	M	W	I	D	T	V	N	.	.	G	L	I	M	V	D	C	A	S	A	K	K	A	E	D	T	L	A	L	L	R	K	S	L	G	S	L	P	V	V	P	L	S	M	E	N	P	I	E	L	T	L	T	E	W	V	R	S	G	S	A	A
Query Conservation																												.	.
Alig confidence																												.	.																																				.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		E	T	T	A	K	L	I	Y	S	K	V	R	T	Y	N	L	P	I	Y	A	I	L	A	P	S	R	V	K	G	Y	I	F	V	E	A	P	N	K	G	V	V	D	E	A	I	R	G	I	R	H	A	R	G	V	L	P	G	E	V	P	F	K	E	.	.	.	.	.	.	I	E	H	F	L	E	E	K	P	A	V
Template Known Secondary structure																T										T	T			S							S	S									T	T		T	T						S	S		B		G	G	G	.	.	.	.	.	.	T	G	G	G				S		T	T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.							.	80	.	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	F	Q	L	L	D	E	A	E	L	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	L	E	P	G	D	L	V	E	V	I	A
Template Known Secondary structure		T	T			T	T							S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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