Job Description P36767 Confidence 100.00% Date Thu Jan 5 11:53:50 GMT 2012 Rank 2 Aligned Residues 301 % Identity 49% Template c2owyB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:recombination-associated protein rdgc; PDBTitle: the recombination-associated protein rdgc adopts a novel toroidal2 architecture for dna binding Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		L	W	F	K	N	L	M	V	Y	R	L	S	R	E	I	S	L	R	A	E	E	M	E	K	Q	L	A	S	M	A	F	T	P	C	G	S	Q	D	M	A	K	M	G	W	V	P	P	M	G	S	H	S	D	A	.	L	T	H	V	A	N	G	Q	I	V	I	C	A	R	K	E	E	K	I	L	P	S	P	V	I
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence		M	W	F	R	N	L	L	V	Y	R	L	T	Q	D	L	Q	L	D	A	D	S	L	E	K	A	L	G	E	K	S	A	R	P	C	A	S	Q	E	L	T	T	Y	G	F	T	A	P	F	G	K	G	P	D	A	P	L	V	H	V	S	Q	D	F	F	L	I	S	A	R	K	E	E	R	I	L	P	G	S	V	V
Template Known Secondary structure					S	S	B						S	S											T	T	T	T	T	T	B						T	T										S	S	S		S	T	T	S		S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	A	L	E	A	K	I	A	K	L	E	A	E	Q	A	R	K	L	K	K	T	E	K	D	S	L	K	D	E	V	L	H	S	L	L	P	R	A	F	S	R	F	S	Q	T	M	M	W	I	D	T	V	N	G	L	I	M	V	D	C	A	S	A	K	K	A	E	D	T	L	A	L	L	R	K	S	L	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	A	L	K	E	K	V	D	E	I	E	A	Q	Q	M	R	K	V	Y	K	K	E	R	D	Q	L	K	D	E	I	V	Q	T	L	L	P	R	A	F	I	R	R	S	S	T	F	A	A	I	A	P	S	L	G	L	I	L	V	D	S	A	S	A	K	K	A	E	D	L	L	S	T	L	R	E	A	L	G	S
Template Known Secondary structure																S		S																			G	G	G														T	T	T	T					S		S													T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	V	V	P	L	S	M	E	N	P	I	E	L	T	L	T	E	W	V	R	S	G	S	A	A	Q	G	F	Q	L	L	D	E	A	E	L	K	S	L	L	E	D	G	G	V	I	R	A	K	K	Q	D	L	T	S	E	E	I	T	N	H	I	E	A	G	K	V	V	T	K	L	A	L	D	W	Q	Q	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	V	R	P	L	S	V	K	V	A	P	T	A	T	L	T	D	W	V	K	T	Q	E	A	A	G	D	F	H	V	L	D	E	C	E	L	R	D	T	H	E	D	G	G	V	V	R	C	K	R	Q	D	L	T	S	E	E	I	Q	L	H	L	T	A	G	K	L	V	T	Q	L	S	L	A	W	S	D	K	L
Template Known Secondary structure									B	S	S													T			S	T	T												S	S	T	T							S	S			T	T	S									T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	V	M	C	D	D	G	S	L	K	R	L	K	F	C	D	E	L	R	D	Q	N	E	D	I	D	R	E	D	F	A	Q	R	F	D	A	D	F	I	L	M	T	G	E	L	A	A	L	I	Q	N	L	I	E	G	L	G	G	E	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	F	V	L	D	D	K	L	A	V	K	R	L	R	F	E	D	L	L	Q	E	Q	A	E	K	D	G	G	E	D	A	L	G	Q	L	D	A	S	F	T	L	M	M	L	T	F	A	E	F	L	P	A	L	F	E	A	L	G	G	E	E	I
Template Known Secondary structure							T	T																	T	T	T	S	T	T	S																											T	S		B
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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