Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 18 Aligned Residues 373 % Identity 26% Template c3sqsA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12 Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	L	P	K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A
Query Conservation
Alig confidence																								.											.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.											.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	T	K	I	K	S	V	R	T	R	V	W	N	W	T	G	P	T	V	P	P	Q	.	G	N	F	C	T	N	A	S	D	A	.	L	W	I	A	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	H	Q	W	L	T	C	E	V	E	T	E	D	G	T	I	G	I	G
Template Known Secondary structure																	S						S	.	S		B				G	G	G	G	.	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S										T	T	S
Template Predicted Secondary structure																								.											.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60																					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	S	T	A	.	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L	G	G	A
Query Conservation						.
Alig confidence						.																																							.
Template Conservation																																													.
Template Sequence		N	A	A	L	A	P	N	V	V	K	Q	A	I	D	E	W	Y	A	P	L	V	I	G	E	D	P	F	D	Y	A	Y	L	W	E	K	M	Y	R	R	T	H	A	W	.	G	R	K	G	I	G	M	T	A	I	S	A	I	D	I	A	I	W	D	L	M	G	K	L	V	G	K	P	V	F	K	L	L	G	G	R
Template Known Secondary structure					S	S											T	T					T	T	S		G	G	G												T				.		S	S	T																						T		B						T
Template Predicted Secondary structure																																													.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.								.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																												.	.	.	.	.	.	.
Query SS confidence													.	.	.																												.	.	.	.	.	.	.
Query Sequence		V	R	D	E	I	Q	F	Y	A	T	G	.	.	.	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	.	.	.	.	.	.	.	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V
Query Conservation													.	.	.																												.	.	.	.	.	.	.
Alig confidence													.	.	.																												.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	E	K	I	P	V	Y	Y	S	K	L	Y	A	D	S	I	P	A	M	Q	A	E	A	E	E	A	Q	K	H	G	Y	Q	G	Y	K	T	R	F	G	Y	G	P	K	D	G	P	A	G	M	R	E	N	L	K	R	V	E	A	L	R	E	V	L	G	Y	D	V	D	L	M	L	E	C	Y	M	G	W	N	L
Template Known Secondary structure			S	S	S										B															T	T	T		S										G	G	G																					S	S	S							T	T		S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L
Query Conservation																																																														.
Alig confidence																																						.	.																							.
Template Conservation																																						.	.
Template Sequence		D	Y	T	K	R	M	L	P	K	L	E	R	F	E	P	R	W	L	E	E	P	V	I	A	D	D	V	A	G	Y	A	E	L	N	A	M	.	.	G	I	V	P	I	S	G	G	E	H	E	F	S	V	M	G	C	A	E	L	I	N	R	K	A	V	S	V	L	Q	Y	D	T	N	R	V	G	G	I	T	A	A
Template Known Secondary structure												G	G	G			S						S		T	T											T	.	.		S	S						T	T			S										T	T			S										T
Template Predicted Secondary structure																																						.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F	G	V	E
Query Conservation
Alig confidence																																														.																									.
Template Conservation																																														.																									.
Template Sequence		Q	K	I	N	A	I	A	E	A	A	Q	I	I	V	I	P	H	A	G	Q	M	H	N	Y	H	L	T	M	A	N	M	N	C	P	I	S	E	Y	F	P	V	F	D	V	.	E	V	G	N	E	L	F	Y	Y	I	F	D	G	D	P	E	A	V	D	G	Y	L	Q	L	.	D	D	D	T	P	G	L	G	I	T
Template Known Secondary structure												T						S	S		S									T		T	T									S			S	.	S	S	S	T	T	T												B	T	T					.		S	S	S		B	T	S
Template Predicted Secondary structure																																														.																									.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400
		389	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	R	D	C	N	L	K	R	P	Y	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	D	A	H	L	K	H	F	E	I	T
Template Known Secondary structure				S	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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