Phyre 2 alignment of P77215 with c3sjnB

Job Description P77215
Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012

Rank 36 Aligned Residues 356

% Identity 25% Template c3sjnB_

PDB info PDB header:lyase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of enolase spea_3858 (target efi-500646) from2 shewanella pealeana with magnesium bound

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	L	K	I	T	D	I	E	V	L	H	L	R	V	P	A	M	D	A	D	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	G	E	D	A	V	I	V	K	V	H	T	D	K	G	I	V	G	V	G	E	A
Template Known Secondary structure			B											S	S		T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S										T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																																					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.

	83	.	.	.	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.
Query Sequence	T	A	G	E	M	G	C	F	.	.	.	.	.	.	.	.	.	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y
Query Conservation									.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																																	.
Template Conservation																																																		.
Template Sequence	D	S	S	P	L	V	V	Q	A	C	I	E	A	P	Q	T	N	F	Y	C	N	G	L	K	R	L	L	I	G	E	N	A	L	E	I	E	R	L	W	N	K	M	Y	W	G	S	N	Y	M	.	G	R	R	G	A	G	I	H	A	I	S	A	I	D	I	A	L	W	D	I	A	G	Q	F	Y	G	V	P	V	H
Template Known Secondary structure	S	S														S	B	T	T	B								T	T	S	B	T	T													T	T	T	T	.		S	S	T																						T	S	B
Template Predicted Secondary structure																																																		.
Template SS confidence
	45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.

	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																													.	.	.
Query SS confidence																	.	.	.																													.	.	.
Query Sequence	K	L	L	G	G	A	V	R	D	E	I	Q	F	Y	A	T	.	.	.	G	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	.	.	.	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q
Query Conservation																	.	.	.																													.	.	.
Alig confidence																	.	.	.																													.	.	.
Template Conservation
Template Sequence	T	L	L	G	G	K	Y	R	D	K	I	R	C	Y	G	T	F	I	P	A	D	K	P	E	D	N	V	A	I	V	Q	G	L	K	D	Q	G	F	S	S	I	K	F	G	G	G	V	M	G	D	D	P	D	T	D	Y	A	I	V	K	A	V	R	E	A	A	G	P	E	M	E	V	Q	I	D	L	A	S	K	W
Template Known Secondary structure			T	T			S		S												S	S	G	G	G	G											T		S						S	T	T	T	T	T																		S	S	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure	.																																																															.
Query SS confidence	.																																																															.
Query Sequence	.	D	V	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L
Query Conservation	.																																																															.
Alig confidence	.																																							.	.																							.
Template Conservation																																								.	.
Template Sequence	H	T	C	G	H	S	A	M	M	A	K	R	L	E	E	F	N	L	N	W	I	E	E	P	V	L	A	D	S	L	I	S	Y	E	K	L	S	R	Q	.	.	V	S	Q	K	I	A	G	G	E	S	L	T	T	R	Y	E	F	Q	E	F	I	T	K	S	N	A	D	I	V	Q	P	D	I	T	R	C	G	G	I
Template Known Secondary structure		S											T	T	T	T	T		S					S	S		T	T										T	T	.	.		S	S						T	T																	S					B	T	T	T	S	S
Template Predicted Secondary structure																																								.	.
Template SS confidence
	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

	306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	T	L	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F
Query Conservation
Alig confidence																																																					.																			.	.
Template Conservation																																																					.																			.	.
Template Sequence	T	E	M	K	K	I	Y	D	I	A	Q	M	N	G	T	Q	L	I	P	H	G	F	S	T	G	I	L	L	H	A	S	V	H	F	L	A	A	C	E	Q	G	T	L	M	E	F	S	Q	S	S	S	P	.	L	F	T	S	L	V	K	N	Q	L	Q	F	D	N	G	F	V	A	.	.	V	S	D	A	P	G	L
Template Known Secondary structure													T	T						B			S														T	S	T	T													.					S	B	T	T						T	T				.	.				S	S	B	T
Template Predicted Secondary structure																																																					.																			.	.
Template SS confidence
	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.

	386	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence	G	V	E	L	N	R	D	C	N	L	K	R	P	Y	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	I	E	L	D	E	E	L	I	A	K	Y	R	V	N
Template Known Secondary structure				B									B
Template Predicted Secondary structure
Template SS confidence
	359	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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