Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 25 Aligned Residues 350 % Identity 19% Template c3nxlD_ PDB info PDB header:lyase Chain: D: PDB Molecule:glucarate dehydratase; PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium Resolution 1.89 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	P	K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V
Query Conservation
Alig confidence																							.	.	.	.	.	.						.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.						.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	P	R	V	T	R	X	Q	V	I	P	V	A	G	R	D	S	X	L	L	.	.	.	.	.	.	N	L	C	G	A	.	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	F	T	R	N	L	V	I	L	D	D	S	S	G	H	T	G	V	G	E
Template Known Secondary structure					B																B		.	.	.	.	.	.		T	T			.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S												T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.						.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30							.	.	.	.	.		.	.																									.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		S	T	A	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L	G	.	G	A	V
Query Conservation																																																																														.
Alig confidence															.																													.	.	.	.	.	.	.																												.
Template Conservation															.																													.	.	.	.	.	.	.
Template Sequence		V	P	G	G	E	G	I	R	H	A	L	E	R	.	X	T	D	L	V	V	G	Q	S	I	G	R	Y	Q	A	T	L	N	A	V	R	A	A	L	S	R	L	D	.	.	.	.	.	.	.	N	V	I	T	A	I	E	A	A	L	L	D	L	L	G	Q	H	L	D	V	P	V	A	A	L	L	G	E	G	Q	Q
Template Known Secondary structure															.						T	T	S	B	G	G	G															T		.	.	.	.	.	.	.																			T	S	B	G	G	G	G	S	T	T
Template Predicted Secondary structure															.																													.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		161	.	.	.	.	.	.	.	.	170	.																																.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Query Sequence		R	D	E	I	Q	F	Y	A	T	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	.	P	T	H	W	G	P	H	D	G	D	A	.	G	I	R	K	D	A	A	M	V	A
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template Conservation
Template Sequence		R	D	A	V	P	X	L	A	Y	L	F	Y	I	G	D	R	G	R	T	D	L	P	Y	R	D	E	A	Q	A	R	T	P	W	F	R	L	R	N	E	E	A	L	T	P	A	A	I	A	R	Q	A	E	A	A	V	D	R	Y	G	F	A	D	F	K	L	K	G	G	V	X	A	G	A	D	E	X	E	A	I	A
Template Known Secondary structure			S				B							B			G	G	G			S						T	T		S	S						T	T	S		B		S																									S	S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																																		.	.	.	.
Query SS confidence																																																		.	.	.	.
Query Sequence		D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	.	.	.	.	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S
Query Conservation																																																		.	.	.	.
Alig confidence								.																													.													.	.	.	.											.	.
Template Conservation								.																													.																											.	.
Template Sequence		A	I	K	A	C	F	.	P	D	A	R	A	T	L	D	P	N	G	A	W	S	L	D	E	A	V	A	L	C	R	G	Q	G	H	L	.	L	A	Y	A	E	D	P	C	G	P	E	G	G	Y	S	G	R	E	V	X	A	E	F	R	R	A	.	.	T	G	I	P	T	A	T	N	X	I	A	T	D	W	R	Q
Template Known Secondary structure								.	T	T	S							T	T	B	B										T	T		T	T	T	.		S				S		B			B	T	T	B													.	.								S	S	S			S
Template Predicted Secondary structure								.																													.																											.	.
Template SS confidence
		242	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		284	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure								.																																					.
Query SS confidence								.																																					.
Query Sequence		F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	.	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D
Query Conservation								.																																					.
Alig confidence								.											.																										.
Template Conservation																			.
Template Sequence		X	D	H	A	V	R	L	Q	A	V	D	I	P	L	A	D	P	.	H	F	W	T	X	Q	G	S	V	R	L	A	Q	L	C	R	D	W	G	L	T	W	G	S	H	S	N	N	H	F	D	V	S	L	A	X	F	T	H	A	A	A	A	A	P	G	T	I	T	A	I	D	T	H	W	I	W	Q	E	G	D	A
Template Known Secondary structure									T			S			B				.																			T				B					S															T			S					B								B	T	T	B
Template Predicted Secondary structure																			.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F	G	V	E	L	N	R	D	C	N	L	K	R
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		R	L	T	R	E	P	L	K	I	V	G	G	Q	V	A	.	.	V	P	E	R	P	G	L	G	I	E	L	D	X	A	Q	V	E	A	A
Template Known Secondary structure			S	B	S	S						T	T				.	.			S	S	S	B	T	S			B
Template Predicted Secondary structure																	.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430