Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 48 Aligned Residues 346 % Identity 27% Template c3mqtV_ PDB info PDB header:isomerase Chain: V: PDB Molecule: PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from shewanella pealeana Resolution 2.10 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	T
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	I	V	S	V	E	F	I	P	V	N	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	N	T	V	I	V	K	V	T	D	E	N	G	V	Y	G	L	G	E	A	D
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.																																													.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40
		84	.	.	.	.	.	90	.										.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.
Query Sequence		A	G	E	M	G	C	F	I	.	.	.	.	.	.	.	.	.	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K
Query Conservation										.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.																																.
Template Conservation																																																		.
Template Sequence		G	P	P	E	C	M	K	A	F	S	E	I	E	N	E	H	K	W	L	N	N	I	K	E	A	V	I	G	R	D	P	L	E	F	R	A	N	Y	N	R	M	Y	D	T	T	K	W	I	.	G	M	R	G	L	G	L	F	A	I	S	G	I	D	M	A	L	Y	D	L	A	G	K	Q	L	G	V	P	A	Y	K
Template Known Secondary structure		S									T	T					B	T	T	B			G	G	G	G	T	T	T	S		T	T													T	T	T	T	.		S	S	T																						T		B
Template Predicted Secondary structure																																																		.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.												.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence		L	L	G	G	A	V	R	D	E	I	Q	F	Y	A	T	G	A	R	.	.	.	.	.	.	.	.	.	.	.	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	.	.	.	.	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		L	M	G	G	A	Q	K	A	Q	L	T	P	Y	F	T	L	Y	P	S	V	A	A	D	A	T	L	S	E	I	V	E	A	Y	K	P	L	I	A	K	A	K	E	R	G	A	K	A	V	K	V	C	I	I	P	N	D	K	V	S	D	K	E	I	V	A	Y	L	R	E	L	R	E	V	I	G	W	D	M	D	M
Template Known Secondary structure			T	T				S	S		B												T	T																				T	T		S										T	T	S																		S	S	S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.
Predicted Secondary structure											.																																																														.
Query SS confidence											.																																																														.
Query Sequence		M	L	D	C	W	M	S	Q	D	.	V	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P
Query Conservation											.																																																														.
Alig confidence											.																																						.	.																							.
Template Conservation																																																	.	.
Template Sequence		M	V	D	C	L	Y	R	W	T	D	W	Q	K	A	R	W	T	F	R	Q	L	E	D	I	D	L	Y	F	I	E	A	C	L	Q	H	D	D	L	I	G	H	Q	K	L	A	A	A	.	.	I	N	T	R	L	C	G	A	E	M	S	T	T	R	F	E	A	Q	E	W	L	E	K	T	G	I	S	V	V	Q	S
Template Known Secondary structure						T	T			S												G	G	G	G			S				S		S		T	T												.	.	S	S	S						T	T																	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	.	.	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I
Query Conservation																																																							.	.
Alig confidence																																																							.	.
Template Conservation
Template Sequence		D	Y	N	R	C	G	G	V	T	E	L	L	R	I	M	D	I	C	E	H	H	N	A	Q	L	M	P	H	N	W	K	T	G	I	T	A	A	A	A	R	H	F	G	I	V	C	H	I	S	E	Y	V	E	Y	L	H	P	D	F	W	N	G	T	L	T	Q	Q	L	T	L	N	E	P	K	I	I	D	G	A	I
Template Known Secondary structure			T	T	T	S	S															T	T									S																T	T		S							G	G	G									S	B	S						B	T	T	B	B
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	S	V	L	D	K	P	G	F	G	V	E	L	N	R	D	C	N	L	K	R	P
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	E	V	S	D	K	P	G	L	G	I	E	L	N	I	E	F	V	E	Q	V	T
Template Known Secondary structure		.	.					S	S	B	T				B
Template Predicted Secondary structure		.	.
Template SS confidence
				362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions