Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 29 Aligned Residues 346 % Identity 23% Template c3mkcA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:racemase; PDBTitle: crystal structure of a putative racemase Resolution 1.77 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	P	K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	A	P	I	K	S	I	E	F	I	P	V	N	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	Q	N	T	V	V	V	K	V	T	D	E	N	G	V	Y	G	L	G	E
Template Known Secondary structure		T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.																																													.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.										.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.
Query Sequence		S	T	A	G	E	M	G	C	F	I	V	E	.	.	.	.	.	.	.	.	.	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V
Query Conservation														.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																														.
Template Conservation																																																				.
Template Sequence		A	D	G	S	P	D	A	I	L	A	Y	A	N	I	E	T	E	H	K	W	L	T	N	I	T	E	K	A	I	G	R	L	P	I	E	I	N	A	I	W	D	A	X	Y	D	A	T	Q	W	Q	.	G	X	R	G	L	G	X	F	A	L	S	G	I	D	X	A	L	Y	D	L	A	G	K	Q	L	G	V	P	A
Template Known Secondary structure				S										T					B	T	T	B			T	T	T	T	T	T	T	S		T	T													T				.		S	S	T																						T		B
Template Predicted Secondary structure																																																				.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.											.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.					.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query Sequence		Y	K	L	L	G	G	A	V	R	D	E	I	Q	F	Y	A	T	G	A	R	.	.	.	.	.	.	.	.	.	.	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	.	.	.	.	D	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W
Query Conservation																						.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation
Template Sequence		Y	Q	L	L	G	G	T	N	K	D	K	V	H	P	Y	L	T	L	Y	P	A	I	P	D	A	S	L	D	V	A	I	K	G	Y	A	P	L	L	E	K	A	K	A	H	N	I	R	A	V	K	V	C	V	P	I	K	A	D	W	S	T	K	E	V	A	Y	Y	L	R	E	L	R	G	I	L	G	H	D	T	D
Template Known Secondary structure					T	T			S		S											S																							T	T		S								T	T																					S	S	S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.
Predicted Secondary structure												.																																																														.
Query SS confidence												.																																																														.
Query Sequence		L	M	L	D	C	W	M	S	Q	D	.	V	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q
Query Conservation												.																																																														.
Alig confidence												.																																						.	.																							.
Template Conservation																																																		.	.
Template Sequence		X	X	V	D	Y	L	Y	R	F	T	D	W	Y	E	V	A	R	L	L	N	S	I	E	D	L	E	L	Y	F	A	E	A	T	L	Q	H	D	D	L	S	G	H	A	K	L	V	E	N	.	.	T	R	S	R	I	C	G	A	E	X	S	T	T	R	F	E	A	E	E	W	I	T	K	G	K	V	H	L	L	Q
Template Known Secondary structure							T	T															T	G	G	G			S				S		S		T	T												.	.		S	S		B				T	T													T	T			S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	.	.	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R
Query Conservation																																																										.	.
Alig confidence																																																										.	.
Template Conservation
Template Sequence		S	D	Y	N	R	C	G	G	L	T	E	L	R	R	I	T	E	X	A	T	A	N	N	V	Q	V	X	P	H	N	W	K	T	G	I	T	S	A	A	A	I	H	Y	Q	F	A	V	G	N	A	P	Y	F	E	Y	V	H	P	E	F	C	D	G	E	L	R	K	Y	L	V	T	P	E	A	E	L	V	D	G	G
Template Known Secondary structure				T	T	T	T	T															T	T									S															T			S	S							G	G	G									S								B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	K	S	V	L	D	K	P	G	F	G	V	E	L	N	R	D	C	N	L	K
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		F	A	.	.	K	P	T	A	P	G	L	G	I	D	L	N	Q	E	F	L	A	S
Template Known Secondary structure				.	.				S	S	B	T											T
Template Predicted Secondary structure				.	.
Template SS confidence
		366	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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