Phyre 2 alignment of P77215 with c3jw7E

Job Description P77215
Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012

Rank 78 Aligned Residues 342

% Identity 21% Template c3jw7E_

PDB info PDB header:isomerase Chain: E: PDB Molecule:dipeptide epimerase; PDBTitle: crystal structure of dipeptide epimerase from enterococcus faecalis2 v583 complexed with mg and dipeptide l-ile-l-tyr

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	T	A
Query Conservation
Alig confidence																				.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	I	K	Q	V	H	V	R	A	S	K	I	K	L	K	E	T	F	T	.	.	.	.	.	I	A	L	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	S	A	D	S	A	I	V	E	I	E	T	E	E	G	L	V	G	Y	G	E	G	G	P
Template Known Secondary structure																				.	.	.	.	.		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	S
Template Predicted Secondary structure																				.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20						.	.	.	.	.																											.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50

								85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L	G
Query Conservation	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.
Template Sequence	G	I	F	I	T	G	E	T	L	A	G	T	L	E	T	I	E	L	F	G	Q	A	I	I	G	L	N	P	F	N	I	E	K	I	H	E	V	M	D	K	I	S	A	F	A	P	.	.	.	.	.	.	.	A	A	K	A	A	I	D	I	A	C	Y	D	L	M	G	Q	K	A	Q	L	P	L	Y	Q	L	L	G
Template Known Secondary structure																							S	T	T			T	T														S	S			.	.	.	.	.	.	.																			T	S	B					T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.
Template SS confidence
	51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.

	158	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence	G	A	V	R	D	E	I	Q	F	Y	A	T	G	.	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V	N	Y	A	T	K	L	A
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence	G	Y	D	N	Q	V	I	T	D	I	T	L	G	I	D	E	P	N	V	M	A	Q	K	A	V	E	K	V	K	L	G	F	D	T	L	K	I	K	V	G	T	G	I	E	A	D	I	A	R	V	K	A	I	R	E	A	V	G	F	D	I	K	L	R	L	D	A	N	Q	A	W	T	P	K	D	A	V	K	A	I
Template Known Secondary structure		S		S										S															T	T	T										S																		T	T	S							T	T		S
Template Predicted Secondary structure
Template SS confidence
	124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	I	A
Query Conservation																																																						.
Alig confidence																														.	.																							.
Template Conservation																														.	.
Template Sequence	Q	A	L	A	D	Y	Q	I	E	L	V	E	Q	P	V	K	R	R	D	L	E	G	L	K	Y	V	T	S	Q	.	.	V	N	T	T	I	M	A	D	E	S	C	F	D	A	Q	D	A	L	E	L	V	K	K	G	T	V	D	V	I	N	I	K	L	M	K	C	G	G	I	H	E	A	L	K	I	N	Q	I	C
Template Known Secondary structure			T	G	G	G									S		T	T												.	.		S	S					S	T	T			S											T			S										T	S
Template Predicted Secondary structure																														.	.
Template SS confidence
	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

	316	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence	K	S	R	G	Q	L	V	V	P	H	G	.	.	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F	G	V	E	L
Query Conservation												.	.
Alig confidence												.	.																															.																				.	.
Template Conservation																																												.																				.	.
Template Sequence	E	T	A	G	I	E	C	M	I	G	C	M	A	E	E	T	T	I	G	I	T	A	A	A	H	L	A	A	A	Q	K	N	I	T	R	A	D	L	D	A	T	F	G	.	L	E	T	A	P	V	T	G	G	V	S	L	E	A	K	P	L	L	E	.	.	L	G	E	A	A	G	L	G	I	S	I
Template Known Secondary structure				T									T	T																	T	T								G	G	G	G	.	B	S	S		S	S	S	B	S	S		S				S				.	.			S	S	S	B	T		B
Template Predicted Secondary structure																																												.																				.	.
Template SS confidence
	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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